{ "type": "genome", "identifier": "GCF_014643655.1", "organism": "Polaribacter pacificus", "title": "Polaribacter pacificus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014643655.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245085", "wgs_master": "BMJW00000000.1", "refseq_category": "na", "taxid": "1775173", "species_taxid": "1775173", "organism_name": "Polaribacter pacificus", "infraspecific_name": "strain=CGMCC 1.15763", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464365v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014643655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/643/655/GCF_014643655.1_ASM1464365v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2716509", "genome_size_ungapped": "2716220", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014643655.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2488", "protein_coding_gene_count": "2434", "non_coding_gene_count": "45", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter pacificus" ], "sample_taxid": [ "1775173" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.756 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2716509", "Number of Sequences": "26", "Longest Sequences (bp)": "1586163", "N50 (bp)": "1586163", "Gap Ratio (%)": "0.010639", "GCcontent (%)": "34.3", "Number of CDSs": "2425", "Average Protein Length": "340.5", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter pacificus", "strain": "strain=CGMCC 1.15763", "accession": "GCA_014643655.1", "taxid": 1775173, "species_taxid": 1775173, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 897, "total_fragments": 897, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 78.2235, "matched_fragments": 228, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 78.2196, "matched_fragments": 257, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 77.9695, "matched_fragments": 260, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 77.8732, "matched_fragments": 259, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 77.8416, "matched_fragments": 246, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 77.8293, "matched_fragments": 251, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 77.8009, "matched_fragments": 269, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aquimarinus", "strain": "strain=ZY113", "accession": "GCA_003129485.1", "taxid": 2100726, "species_taxid": 2100726, "relation_to_type": "type", "validated": true, "ani": 77.7765, "matched_fragments": 247, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.6617, "matched_fragments": 219, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_900106865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.6592, "matched_fragments": 222, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_001280865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.6224, "matched_fragments": 224, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 77.622, "matched_fragments": 270, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum ovolyticum", "strain": "strain=DSM 18103", "accession": "GCA_000430545.1", "taxid": 104270, "species_taxid": 104270, "relation_to_type": "type", "validated": true, "ani": 77.6208, "matched_fragments": 199, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum pelagium", "strain": "strain=S7007", "accession": "GCA_014062345.1", "taxid": 2759527, "species_taxid": 2759527, "relation_to_type": "type", "validated": true, "ani": 77.525, "matched_fragments": 206, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 77.4943, "matched_fragments": 267, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum finnmarkense", "strain": "strain=TNO010", "accession": "GCA_900239495.1", "taxid": 2781243, "species_taxid": 2781243, "relation_to_type": "type", "validated": true, "ani": 77.4504, "matched_fragments": 184, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ACAM 171", "accession": "GCA_007997115.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 77.4282, "matched_fragments": 225, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum singaporense", "strain": "strain=DSM 106434", "accession": "GCA_003867015.1", "taxid": 2358479, "species_taxid": 2358479, "relation_to_type": "type", "validated": true, "ani": 77.4172, "matched_fragments": 191, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter agarilyticus", "strain": "strain=DSM 29150", "accession": "GCA_900188235.1", "taxid": 1109740, 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"type", "validated": true, "ani": 77.2394, "matched_fragments": 228, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oricola", "strain": "strain=DSM 24956", "accession": "GCA_900106565.1", "taxid": 762486, "species_taxid": 762486, "relation_to_type": "type", "validated": true, "ani": 77.0965, "matched_fragments": 149, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.5597, "matched_fragments": 102, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014643655.1", "gtdb_species": "s__Polaribacter_A pacificus", "ani": 100.0, "matched_fragments": 897, "total_fragments": 897, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014352875.1", "gtdb_species": "s__Polaribacter sp014352875", "ani": 78.1962, "matched_fragments": 258, "total_fragments": 897, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000766795.1", "gtdb_species": "s__Polaribacter sp000766795", "ani": 77.9987, "matched_fragments": 267, "total_fragments": 897, 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