{ "type": "genome", "identifier": "GCF_014644315.1", "organism": "Tsuneonella deserti", "title": "Tsuneonella deserti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014644315.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245103", "wgs_master": "BMKL00000000.1", "refseq_category": "reference genome", "taxid": "2035528", "species_taxid": "2035528", "organism_name": "Tsuneonella deserti", "infraspecific_name": "strain=CGMCC 1.15959", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464431v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014644315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/644/315/GCF_014644315.1_ASM1464431v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2775751", "genome_size_ungapped": "2775751", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014644315.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2764", "protein_coding_gene_count": "2682", "non_coding_gene_count": "51", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Tsuneonella deserti" ], "sample_taxid": [ "2035528" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.770 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2775751", "Number of Sequences": "20", "Longest Sequences (bp)": "2722680", "N50 (bp)": "2722680", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "2712", "Average Protein Length": "312.2", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tsuneonella deserti", "strain": "strain=CGMCC 1.15959", "accession": "GCA_014644315.1", "taxid": 2035528, "species_taxid": 2035528, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 79.5841, "matched_fragments": 421, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.5103, "matched_fragments": 411, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.9865, "matched_fragments": 382, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { 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