{
    "type": "genome",
    "identifier": "GCF_014644475.1",
    "organism": "Sinomonas atrocyanea",
    "title": "Sinomonas atrocyanea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014644475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245118",
        "wgs_master": "BMKT00000000.1",
        "refseq_category": "na",
        "taxid": "37927",
        "species_taxid": "37927",
        "organism_name": "Sinomonas atrocyanea",
        "infraspecific_name": "strain=CGMCC 1.1891",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464447v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014644475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/644/475/GCF_014644475.1_ASM1464447v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4417728",
        "genome_size_ungapped": "4414730",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "193",
        "contig_count": "193",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014644475.1-RS_2024_08_25",
        "annotation_date": "2024-08-25",
        "total_gene_count": "4276",
        "protein_coding_gene_count": "4106",
        "non_coding_gene_count": "60",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sinomonas atrocyanea"
        ],
        "sample_taxid": [
            "37927"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.194 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4417728",
        "Number of Sequences": "193",
        "Longest Sequences (bp)": "111813",
        "N50 (bp)": "41828",
        "Gap Ratio (%)": "0.068587",
        "GCcontent (%)": "71.3",
        "Number of CDSs": "4029",
        "Average Protein Length": "317.0",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sinomonas atrocyanea",
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                "species_taxid": 37927,
                "relation_to_type": "type",
                "validated": true,
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            {
                "organism_name": "Sinomonas atrocyanea",
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                "validated": true,
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                "status": "conclusive"
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            {
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                "status": "conclusive"
            },
            {
                "organism_name": "Sinomonas notoginsengisoli",
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                "accession": "GCA_021554725.1",
                "taxid": 1457311,
                "species_taxid": 1457311,
                "relation_to_type": "type",
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                "ani": 83.1738,
                "matched_fragments": 806,
                "total_fragments": 1377,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomonas mesophila",
                "strain": "strain=MPKL 26",
                "accession": "GCA_001999765.1",
                "taxid": 1531955,
                "species_taxid": 1531955,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8405,
                "matched_fragments": 768,
                "total_fragments": 1377,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomonas albida",
                "strain": "strain=LC13",
                "accession": "GCA_004919045.1",
                "taxid": 369942,
                "species_taxid": 369942,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6029,
                "matched_fragments": 714,
                "total_fragments": 1377,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter sedimenti",
                "strain": "strain=MIC A30",
                "accession": "GCA_011750795.2",
                "taxid": 2694931,
                "species_taxid": 2694931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5194,
                "matched_fragments": 375,
                "total_fragments": 1377,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter wenxiniae",
                "strain": "strain=AETb3-4",
                "accession": "GCA_013376105.1",
                "taxid": 2713570,
                "species_taxid": 2713570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1102,
                "matched_fragments": 421,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_017898065.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8718,
                "matched_fragments": 294,
                "total_fragments": 1377,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_018622995.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8027,
                "matched_fragments": 301,
                "total_fragments": 1377,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_001577305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014656475.1",
                "gtdb_species": "s__Sinomonas sp014656475",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002224485.1",
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                "matched_fragments": 877,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001999765.1",
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                "matched_fragments": 769,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004919045.1",
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            },
            {
                "accession": "GCF_005877005.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005876955.1",
                "gtdb_species": "s__Sinomonas sp005876955",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.491,
        "doubling_h": null,
        "growth_tmp": 28.5,
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        "gc_content": 70.24,
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        "rRNA16S_genes": 4.0,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sinomonas",
        "atrocyanea"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}