{
    "type": "genome",
    "identifier": "GCF_014644535.1",
    "organism": "Neoroseomonas lacus",
    "title": "Neoroseomonas lacus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014644535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245122",
        "wgs_master": "BMKW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "287609",
        "species_taxid": "287609",
        "organism_name": "Neoroseomonas lacus",
        "infraspecific_name": "strain=CGMCC 1.3617",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464453v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014644535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/644/535/GCF_014644535.1_ASM1464453v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6402673",
        "genome_size_ungapped": "6402673",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "73",
        "contig_count": "73",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014644535.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "6133",
        "protein_coding_gene_count": "5963",
        "non_coding_gene_count": "54",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Neoroseomonas lacus"
        ],
        "sample_taxid": [
            "287609"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.738 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6402673",
        "Number of Sequences": "73",
        "Longest Sequences (bp)": "680232",
        "N50 (bp)": "379484",
        "Gap Ratio (%)": "0.000297",
        "GCcontent (%)": "68.7",
        "Number of CDSs": "6120",
        "Average Protein Length": "311.3",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseomonas lacus",
                "strain": "strain=CGMCC 1.3617",
                "accession": "GCA_014644535.1",
                "taxid": 287609,
                "species_taxid": 287609,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2100,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseomonas oryzicola",
                "strain": "strain=KCTC 22478",
                "accession": "GCA_012163135.1",
                "taxid": 535904,
                "species_taxid": 535904,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0548,
                "matched_fragments": 1267,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas alkaliterrae",
                "strain": "strain=DSM 25895",
                "accession": "GCA_014199195.1",
                "taxid": 1452450,
                "species_taxid": 1452450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2742,
                "matched_fragments": 1066,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas rubea",
                "strain": "strain=MO17",
                "accession": "GCA_016106015.1",
                "taxid": 2748666,
                "species_taxid": 2748666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1881,
                "matched_fragments": 936,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Falsiroseomonas frigidaquae",
                "strain": "strain=JCM 15073",
                "accession": "GCA_012163145.1",
                "taxid": 487318,
                "species_taxid": 487318,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.046,
                "matched_fragments": 827,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas hellenica",
                "strain": "strain=LMG 31523",
                "accession": "GCA_018129085.1",
                "taxid": 2687306,
                "species_taxid": 2687306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.998,
                "matched_fragments": 889,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Falsiroseomonas selenitidurans",
                "strain": "strain=BU-1",
                "accession": "GCA_012103215.1",
                "taxid": 2716335,
                "species_taxid": 2716335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8776,
                "matched_fragments": 839,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Falsiroseomonas tokyonensis",
                "strain": "strain=K-20",
                "accession": "GCA_019024325.1",
                "taxid": 430521,
                "species_taxid": 430521,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8412,
                "matched_fragments": 832,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siccirubricoccus deserti",
                "strain": "strain=SYSU D8009",
                "accession": "GCA_014283215.1",
                "taxid": 2013562,
                "species_taxid": 2013562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5922,
                "matched_fragments": 807,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas deserti",
                "strain": "strain=M3",
                "accession": "GCA_001982615.1",
                "taxid": 1817963,
                "species_taxid": 1817963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3048,
                "matched_fragments": 687,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovarius lipocyclicus",
                "strain": "strain=CCUG 44693",
                "accession": "GCA_009900765.1",
                "taxid": 268410,
                "species_taxid": 268410,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2851,
                "matched_fragments": 665,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseococcus pinisoli",
                "strain": "strain=XZZS9",
                "accession": "GCA_018413645.1",
                "taxid": 2835040,
                "species_taxid": 2835040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2811,
                "matched_fragments": 624,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovarius crocodyli",
                "strain": "strain=CCP-6",
                "accession": "GCA_004005855.1",
                "taxid": 1979269,
                "species_taxid": 1979269,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.05,
                "matched_fragments": 668,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas haemaphysalidis",
                "strain": "strain=546",
                "accession": "GCA_017355405.1",
                "taxid": 2768162,
                "species_taxid": 2768162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9696,
                "matched_fragments": 586,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas rosea",
                "strain": "strain=DSM 14916",
                "accession": "GCA_900141905.1",
                "taxid": 198092,
                "species_taxid": 198092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8815,
                "matched_fragments": 583,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014644535.1",
                "gtdb_species": "s__Roseomonas_B lacus",
                "ani": 100.0,
                "matched_fragments": 2100,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018129005.1",
                "gtdb_species": "s__Roseomonas_B eburnea",
                "ani": 83.0722,
                "matched_fragments": 1274,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012163135.1",
                "gtdb_species": "s__Roseomonas_B oryzicola",
                "ani": 83.0371,
                "matched_fragments": 1269,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018129025.1",
                "gtdb_species": "s__Roseomonas_B terrae",
                "ani": 82.9107,
                "matched_fragments": 1262,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016106005.1",
                "gtdb_species": "s__Roseomonas_B sp016106005",
                "ani": 82.8116,
                "matched_fragments": 1015,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012927745.1",
                "gtdb_species": "s__Roseomonas_B sp012927745",
                "ani": 82.7487,
                "matched_fragments": 1219,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018129065.1",
                "gtdb_species": "s__Roseomonas_B soli",
                "ani": 82.6992,
                "matched_fragments": 1172,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001464375.1",
                "gtdb_species": "s__Roseomonas_B sp001464375",
                "ani": 82.652,
                "matched_fragments": 1109,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017813355.1",
                "gtdb_species": "s__Roseomonas_B sp017813355",
                "ani": 82.5839,
                "matched_fragments": 1157,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014199195.1",
                "gtdb_species": "s__Roseomonas_B alkaliterrae",
                "ani": 82.2758,
                "matched_fragments": 1066,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005222755.1",
                "gtdb_species": "s__Roseomonas_B sp005222755",
                "ani": 82.0434,
                "matched_fragments": 1186,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Neoroseomonas",
        "lacus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}