{ "type": "genome", "identifier": "GCF_014644555.1", "organism": "Glutamicibacter ardleyensis", "title": "Glutamicibacter ardleyensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014644555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245123", "wgs_master": "BMKX00000000.1", "refseq_category": "reference genome", "taxid": "225894", "species_taxid": "225894", "organism_name": "Glutamicibacter ardleyensis", "infraspecific_name": "strain=CGMCC 1.3685", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464455v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014644555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/644/555/GCF_014644555.1_ASM1464455v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3936280", "genome_size_ungapped": "3935989", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014644555.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3750", "protein_coding_gene_count": "3643", "non_coding_gene_count": "68", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Glutamicibacter ardleyensis" ], "sample_taxid": [ "225894" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.124 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3936280", "Number of Sequences": "28", "Longest Sequences (bp)": "1004628", "N50 (bp)": "271783", "Gap Ratio (%)": "0.007393", "GCcontent (%)": "56.5", "Number of CDSs": "3750", "Average Protein Length": "305.3", "Coding Ratio (%)": "87.2", "Number of rRNAs": "4", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Glutamicibacter ardleyensis", "strain": "strain=CGMCC 1.3685", "accession": "GCA_014644555.1", "taxid": 225894, "species_taxid": 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95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5917, "matched_fragments": 95, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Renibacterium salmoninarum", "strain": "strain=ATCC 33209", "accession": "GCA_000018885.1", "taxid": 1646, "species_taxid": 1646, "relation_to_type": "type", "validated": true, "ani": 77.5365, "matched_fragments": 52, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter stackebrandtii", "strain": "strain=DSM 16005", "accession": "GCA_017876675.1", "taxid": 272161, "species_taxid": 272161, "relation_to_type": "type", "validated": true, "ani": 77.4619, "matched_fragments": 118, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium bovistercoris", "strain": "strain=NEAU-LLE", "accession": "GCA_003387575.1", "taxid": 2293570, "species_taxid": 2293570, "relation_to_type": "type", "validated": true, "ani": 76.0884, "matched_fragments": 55, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014644555.1", "gtdb_species": "s__Glutamicibacter ardleyensis", "ani": 100.0, "matched_fragments": 1297, "total_fragments": 1298, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_003486025.1", "gtdb_species": 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0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Glutamicibacter", "ardleyensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }