{
    "type": "genome",
    "identifier": "GCF_014645055.1",
    "organism": "Caulobacter rhizosphaerae",
    "title": "Caulobacter rhizosphaerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014645055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245131",
        "wgs_master": "BMLD00000000.1",
        "refseq_category": "na",
        "taxid": "2010972",
        "species_taxid": "2010972",
        "organism_name": "Caulobacter rhizosphaerae",
        "infraspecific_name": "strain=CGMCC 1.15915",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464505v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014645055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/645/055/GCF_014645055.1_ASM1464505v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5870819",
        "genome_size_ungapped": "5870725",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014645055.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "5489",
        "protein_coding_gene_count": "5337",
        "non_coding_gene_count": "53",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caulobacter rhizosphaerae"
        ],
        "sample_taxid": [
            "2010972"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.592 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5870819",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "775199",
        "N50 (bp)": "353822",
        "Gap Ratio (%)": "0.001601",
        "GCcontent (%)": "68.6",
        "Number of CDSs": "5387",
        "Average Protein Length": "324.1",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Caulobacter rhizosphaerae",
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            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
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                "organism_name": "Caulobacter soli",
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                "matched_fragments": 1265,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter hibisci",
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                "accession": "GCA_016135805.1",
                "taxid": 2035993,
                "species_taxid": 2035993,
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                "validated": true,
                "ani": 84.702,
                "matched_fragments": 1128,
                "total_fragments": 1937,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter flavus",
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                "species_taxid": 1679497,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1137,
                "total_fragments": 1937,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter zeae",
                "strain": "strain=410",
                "accession": "GCA_002858925.1",
                "taxid": 2055137,
                "species_taxid": 2055137,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1110,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter flavus",
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                "relation_to_type": "type",
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                "matched_fragments": 1136,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter radicis",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Caulobacter henricii",
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                "taxid": 69395,
                "species_taxid": 69395,
                "relation_to_type": "type",
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                "matched_fragments": 846,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phenylobacterium aquaticum",
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                "taxid": 1763816,
                "species_taxid": 1763816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5922,
                "matched_fragments": 721,
                "total_fragments": 1937,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phenylobacterium glaciei",
                "strain": "strain=20VBR1",
                "accession": "GCA_016772415.2",
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                "species_taxid": 2803784,
                "relation_to_type": "type",
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                "total_fragments": 1937,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas albigilva",
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                "accession": "GCA_023503965.1",
                "taxid": 1312364,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7628,
                "matched_fragments": 510,
                "total_fragments": 1937,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas guildfordensis",
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                "accession": "GCA_014836405.1",
                "taxid": 2762241,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_010977555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
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                "mean_intra_species_ani": "98.18",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_004342605.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
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                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_000745545.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.222,
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    "_genome_taxon": [
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        "rhizosphaerae"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}