{ "type": "genome", "identifier": "GCF_014645195.1", "organism": "Novosphingobium indicum", "title": "Novosphingobium indicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014645195.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245140", "wgs_master": "BMLK00000000.1", "refseq_category": "reference genome", "taxid": "462949", "species_taxid": "462949", "organism_name": "Novosphingobium indicum", "infraspecific_name": "strain=CGMCC 1.6784", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464519v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014645195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/645/195/GCF_014645195.1_ASM1464519v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4961652", "genome_size_ungapped": "4961400", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "103", "contig_count": "103", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014645195.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4893", "protein_coding_gene_count": "4756", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium indicum" ], "sample_taxid": [ "462949" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.388 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4961652", "Number of Sequences": "103", "Longest Sequences (bp)": "345790", "N50 (bp)": "171767", "Gap Ratio (%)": "0.005079", "GCcontent (%)": "63.1", "Number of CDSs": "4798", "Average Protein Length": "305.9", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium indicum", "strain": "strain=CGMCC 1.6784", "accession": "GCA_014645195.1", "taxid": 462949, "species_taxid": 462949, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1605, "total_fragments": 1607, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium malaysiense", "strain": "strain=MUSC 273", "accession": "GCA_000802225.1", "taxid": 1348853, "species_taxid": 1348853, "relation_to_type": "type", "validated": true, "ani": 86.6353, "matched_fragments": 1019, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium naphthalenivorans", "strain": "strain=NBRC 102051", "accession": "GCA_001590985.1", "taxid": 273168, "species_taxid": 273168, "relation_to_type": "type", "validated": true, "ani": 83.8272, "matched_fragments": 863, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000767465.1", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", 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"matched_fragments": 658, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aureum", "strain": "strain=YJ-S2-02", "accession": "GCA_015865035.1", "taxid": 2792964, "species_taxid": 2792964, "relation_to_type": "type", "validated": true, "ani": 80.8263, "matched_fragments": 647, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium guangzhouense", "strain": "strain=SA925", "accession": "GCA_002896965.1", "taxid": 1850347, "species_taxid": 1850347, "relation_to_type": "type", "validated": true, "ani": 80.6874, "matched_fragments": 697, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 80.6244, "matched_fragments": 636, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 80.5111, "matched_fragments": 604, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 80.4762, "matched_fragments": 647, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 79.8247, "matched_fragments": 546, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.5391, "matched_fragments": 460, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.2987, "matched_fragments": 493, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014645195.1", "gtdb_species": "s__Novosphingobium indicum", "ani": 100.0, "matched_fragments": 1605, "total_fragments": 1607, "gtdb_taxonomy": 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