{
    "type": "genome",
    "identifier": "GCF_014645515.1",
    "organism": "Oceanobacillus neutriphilus",
    "title": "Oceanobacillus neutriphilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014645515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245156",
        "wgs_master": "BMLW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "531815",
        "species_taxid": "531815",
        "organism_name": "Oceanobacillus neutriphilus",
        "infraspecific_name": "strain=CGMCC 1.7693",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464551v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014645515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/645/515/GCF_014645515.1_ASM1464551v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5443335",
        "genome_size_ungapped": "5443335",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "54",
        "contig_count": "54",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014645515.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "5377",
        "protein_coding_gene_count": "5233",
        "non_coding_gene_count": "80",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oceanobacillus neutriphilus"
        ],
        "sample_taxid": [
            "531815"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.537 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5443335",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "689395",
        "N50 (bp)": "297965",
        "Gap Ratio (%)": "0.000257",
        "GCcontent (%)": "37.9",
        "Number of CDSs": "5302",
        "Average Protein Length": "284.0",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "5",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Oceanobacillus neutriphilus",
                "strain": "strain=CGMCC 1.7693",
                "accession": "GCA_014645515.1",
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                "species_taxid": 531815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1792,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Oceanobacillus sojae",
                "strain": "strain=NBRC 105379",
                "accession": "GCA_007991515.1",
                "taxid": 582851,
                "species_taxid": 582851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4874,
                "matched_fragments": 1368,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus jeddahense",
                "strain": "strain=S5",
                "accession": "GCA_000750635.1",
                "taxid": 1462527,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 82.042,
                "matched_fragments": 983,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus timonensis",
                "strain": "strain=Marseille-P3532",
                "accession": "GCA_900166635.1",
                "taxid": 1926285,
                "species_taxid": 1926285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0414,
                "matched_fragments": 831,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus kimchii",
                "strain": "strain=X50",
                "accession": "GCA_000340475.1",
                "taxid": 746691,
                "species_taxid": 746691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7726,
                "matched_fragments": 198,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus profundus",
                "strain": "strain=CL-MP28",
                "accession": "GCA_008087205.1",
                "taxid": 372463,
                "species_taxid": 372463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5884,
                "matched_fragments": 168,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus iheyensis",
                "strain": "strain=HTE831",
                "accession": "GCA_000011245.1",
                "taxid": 182710,
                "species_taxid": 182710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5139,
                "matched_fragments": 182,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus profundus",
                "strain": "strain=DSM 18246",
                "accession": "GCA_003515705.1",
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                "species_taxid": 372463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4616,
                "matched_fragments": 168,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus alkalisoli",
                "strain": "strain=APA_J-2 (6-2)",
                "accession": "GCA_021556485.1",
                "taxid": 2925113,
                "species_taxid": 2925113,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0904,
                "matched_fragments": 85,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus zhaokaii",
                "strain": "strain=160",
                "accession": "GCA_003352005.1",
                "taxid": 2052660,
                "species_taxid": 2052660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0792,
                "matched_fragments": 123,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus bambusae",
                "strain": "strain=BG109",
                "accession": "GCA_017497975.1",
                "taxid": 2795218,
                "species_taxid": 2795218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1168,
                "matched_fragments": 65,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014645515.1",
                "gtdb_species": "s__Oceanobacillus neutriphilus",
                "ani": 100.0,
                "matched_fragments": 1792,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900162665.1",
                "gtdb_species": "s__Oceanobacillus sojae_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
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            },
            {
                "accession": "GCF_009389585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
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                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
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            },
            {
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
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        "mesophilic_range_tmp": 1.0,
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        "filament_cell_shape": 0.0,
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        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
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        "neutriphilus"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}