{
    "type": "genome",
    "identifier": "GCF_014645575.1",
    "organism": "Deinococcus wulumuqiensis",
    "title": "Deinococcus wulumuqiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014645575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245159",
        "wgs_master": "BMLZ00000000.1",
        "refseq_category": "na",
        "taxid": "980427",
        "species_taxid": "980427",
        "organism_name": "Deinococcus wulumuqiensis",
        "infraspecific_name": "strain=CGMCC 1.8884",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464557v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014645575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/645/575/GCF_014645575.1_ASM1464557v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3486014",
        "genome_size_ungapped": "3484980",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "144",
        "contig_count": "144",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014645575.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3318",
        "protein_coding_gene_count": "3220",
        "non_coding_gene_count": "53",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deinococcus wulumuqiensis"
        ],
        "sample_taxid": [
            "980427"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.958 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3486014",
        "Number of Sequences": "144",
        "Longest Sequences (bp)": "170593",
        "N50 (bp)": "64036",
        "Gap Ratio (%)": "0.029661",
        "GCcontent (%)": "65.7",
        "Number of CDSs": "3250",
        "Average Protein Length": "302.4",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Deinococcus wulumuqiensis",
                "strain": "strain=R12",
                "accession": "GCA_014875845.1",
                "taxid": 980427,
                "species_taxid": 980427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9853,
                "matched_fragments": 1077,
                "total_fragments": 1097,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus wulumuqiensis",
                "strain": "strain=R12",
                "accession": "GCA_000348665.1",
                "taxid": 980427,
                "species_taxid": 980427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.949,
                "matched_fragments": 977,
                "total_fragments": 1097,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus wulumuqiensis",
                "strain": "strain=R12",
                "accession": "GCA_014875835.1",
                "taxid": 980427,
                "species_taxid": 980427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9372,
                "matched_fragments": 1007,
                "total_fragments": 1097,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus wulumuqiensis",
                "strain": "strain=R12",
                "accession": "GCA_014875975.1",
                "taxid": 980427,
                "species_taxid": 980427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9118,
                "matched_fragments": 1017,
                "total_fragments": 1097,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus wulumuqiensis",
                "strain": "strain=R12",
                "accession": "GCA_014875745.1",
                "taxid": 980427,
                "species_taxid": 980427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9099,
                "matched_fragments": 1035,
                "total_fragments": 1097,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus wulumuqiensis",
                "strain": "strain=R12",
                "accession": "GCA_014875875.1",
                "taxid": 980427,
                "species_taxid": 980427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8787,
                "matched_fragments": 1010,
                "total_fragments": 1097,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011067105.1",
                "gtdb_species": "s__Deinococcus wulumuqiensis",
                "ani": 99.9853,
                "matched_fragments": 1077,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "97.50",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 19,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000008565.1",
                "gtdb_species": "s__Deinococcus radiodurans",
                "ani": 87.3128,
                "matched_fragments": 821,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_900109185.1",
                "gtdb_species": "s__Deinococcus reticulitermitis",
                "ani": 80.9663,
                "matched_fragments": 652,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000252445.1",
                "gtdb_species": "s__Deinococcus gobiensis",
                "ani": 80.6075,
                "matched_fragments": 597,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000599865.1",
                "gtdb_species": "s__Deinococcus phoenicis",
                "ani": 79.8305,
                "matched_fragments": 536,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002953415.1",
                "gtdb_species": "s__Deinococcus sp002953415",
                "ani": 79.8116,
                "matched_fragments": 535,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014201885.1",
                "gtdb_species": "s__Deinococcus budaensis",
                "ani": 79.6982,
                "matched_fragments": 588,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018260275.1",
                "gtdb_species": "s__Deinococcus sp018260275",
                "ani": 79.4387,
                "matched_fragments": 365,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018260405.1",
                "gtdb_species": "s__Deinococcus sp018260405",
                "ani": 79.3782,
                "matched_fragments": 428,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004758605.1",
                "gtdb_species": "s__Deinococcus metallilatus",
                "ani": 79.371,
                "matched_fragments": 536,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014647075.1",
                "gtdb_species": "s__Deinococcus aerophilus",
                "ani": 79.2172,
                "matched_fragments": 501,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003444775.1",
                "gtdb_species": "s__Deinococcus ficus",
                "ani": 78.9302,
                "matched_fragments": 494,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000190555.1",
                "gtdb_species": "s__Deinococcus proteolyticus",
                "ani": 78.8736,
                "matched_fragments": 385,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001485435.1",
                "gtdb_species": "s__Deinococcus grandis",
                "ani": 78.8359,
                "matched_fragments": 519,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.65",
                "min_intra_species_ani": "95.40",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001007995.1",
                "gtdb_species": "s__Deinococcus soli",
                "ani": 78.8113,
                "matched_fragments": 480,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000701425.1",
                "gtdb_species": "s__Deinococcus frigens",
                "ani": 78.8059,
                "matched_fragments": 490,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013337115.1",
                "gtdb_species": "s__Deinococcus sp013337115",
                "ani": 78.7643,
                "matched_fragments": 505,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014647435.1",
                "gtdb_species": "s__Deinococcus radiotolerans",
                "ani": 78.601,
                "matched_fragments": 471,
                "total_fragments": 1097,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.051,
        "cell_length": 0.196,
        "doubling_h": 0.111,
        "growth_tmp": 30.0,
        "optimum_tmp": 33.5,
        "optimum_ph": 7.0,
        "genome_size": 3436728.5,
        "gc_content": 66.059,
        "coding_genes": 3388.0,
        "rRNA16S_genes": 3.545,
        "tRNA_genes": 47.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Deinococcus",
        "wulumuqiensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}