{ "type": "genome", "identifier": "GCF_014645615.1", "organism": "Paenibacillus hunanensis", "title": "Paenibacillus hunanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014645615.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245161", "wgs_master": "BMMB00000000.1", "refseq_category": "na", "taxid": "539262", "species_taxid": "539262", "organism_name": "Paenibacillus hunanensis", "infraspecific_name": "strain=CGMCC 1.8907", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464561v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014645615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/645/615/GCF_014645615.1_ASM1464561v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5692767", "genome_size_ungapped": "5692688", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014645615.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4682", "protein_coding_gene_count": "4566", "non_coding_gene_count": "88", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus hunanensis" ], "sample_taxid": [ "539262" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.620 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5692767", "Number of Sequences": "70", "Longest Sequences (bp)": "857519", "N50 (bp)": "580662", "Gap Ratio (%)": "0.001493", "GCcontent (%)": "46.4", "Number of CDSs": "4778", "Average Protein Length": "315.6", "Coding Ratio (%)": "79.5", "Number of rRNAs": "5", "Number of tRNAs": "80", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus hunanensis", "strain": "strain=CGMCC 1.8907", "accession": "GCA_014645615.1", "taxid": 539262, "species_taxid": 539262, 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"below_threshold" }, { "organism_name": "Paenibacillus lupini", "strain": "strain=CECT 8235", "accession": "GCA_011761355.1", "taxid": 1450204, "species_taxid": 1450204, "relation_to_type": "type", "validated": true, "ani": 76.9426, "matched_fragments": 72, "total_fragments": 1868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharibacillus qingshengii", "strain": "strain=JCM 31172", "accession": "GCA_013185195.1", "taxid": 1763540, "species_taxid": 1763540, "relation_to_type": "type", "validated": true, "ani": 76.5266, "matched_fragments": 116, "total_fragments": 1868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 76.3854, "matched_fragments": 105, "total_fragments": 1868, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "hunanensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }