{
    "type": "genome",
    "identifier": "GCF_014645715.1",
    "organism": "Rufibacter glacialis",
    "title": "Rufibacter glacialis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014645715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245168",
        "wgs_master": "BMMG00000000.1",
        "refseq_category": "na",
        "taxid": "1259555",
        "species_taxid": "1259555",
        "organism_name": "Rufibacter glacialis",
        "infraspecific_name": "strain=CGMCC 1.9789",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464571v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014645715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/645/715/GCF_014645715.1_ASM1464571v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5324485",
        "genome_size_ungapped": "5324386",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014645715.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4245",
        "protein_coding_gene_count": "4172",
        "non_coding_gene_count": "49",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rufibacter glacialis"
        ],
        "sample_taxid": [
            "1259555"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.511 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 96.88,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5324485",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "978251",
        "N50 (bp)": "862904",
        "Gap Ratio (%)": "0.001859",
        "GCcontent (%)": "51.9",
        "Number of CDSs": "4181",
        "Average Protein Length": "347.1",
        "Coding Ratio (%)": "81.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rufibacter glacialis",
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                "species_taxid": 1259555,
                "relation_to_type": "type",
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                "total_fragments": 1765,
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            },
            {
                "organism_name": "Rufibacter glacialis",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_024436355.1",
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                "species_taxid": 2762756,
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                "validated": true,
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                "status": "below_threshold"
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            {
                "organism_name": "Rufibacter sediminis",
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                "species_taxid": 2762756,
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                "validated": true,
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                "status": "below_threshold"
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            {
                "organism_name": "Rufibacter hautae",
                "strain": "strain=NBS58-1",
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                "species_taxid": 2595005,
                "relation_to_type": "type",
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                "ani": 81.3778,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rufibacter latericius",
                "strain": "strain=R-22-1 c-1",
                "accession": "GCA_003721515.1",
                "taxid": 2487040,
                "species_taxid": 2487040,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rufibacter immobilis",
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                "taxid": 1348778,
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                "validated": true,
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                "status": "below_threshold"
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            {
                "organism_name": "Rufibacter tibetensis",
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                "species_taxid": 512763,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Rufibacter radiotolerans",
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                "species_taxid": 1379910,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 876,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter mangrovi",
                "strain": "strain=HB172049",
                "accession": "GCA_006385705.1",
                "taxid": 2589816,
                "species_taxid": 2589816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7499,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter deserti",
                "strain": "strain=JC215",
                "accession": "GCA_023630255.1",
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                "relation_to_type": "type",
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                "ani": 76.42,
                "matched_fragments": 83,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter ruber",
                "strain": "strain=JC213",
                "accession": "GCA_023630205.1",
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                "species_taxid": 1343895,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3721,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
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}