{ "type": "genome", "identifier": "GCF_014646195.1", "organism": "Microlunatus endophyticus", "title": "Microlunatus endophyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646195.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245196", "wgs_master": "BMMZ00000000.1", "refseq_category": "reference genome", "taxid": "1716077", "species_taxid": "1716077", "organism_name": "Microlunatus endophyticus", "infraspecific_name": "strain=CGMCC 4.7306", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464619v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/195/GCF_014646195.1_ASM1464619v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5091082", "genome_size_ungapped": "5091082", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646195.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4838", "protein_coding_gene_count": "4724", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Microlunatus endophyticus" ], "sample_taxid": [ "1716077" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5091082", "Number of Sequences": "31", "Longest Sequences (bp)": "774678", "N50 (bp)": "358367", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.9", "Number of CDSs": "4825", "Average Protein Length": "319.8", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microlunatus endophyticus", "strain": "strain=CGMCC 4.7306", "accession": "GCA_014646195.1", "taxid": 1716077, "species_taxid": 1716077, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1681, "total_fragments": 1682, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microlunatus elymi", "strain": "strain=KUDC0627", "accession": "GCA_007362775.1", "taxid": 2596828, "species_taxid": 2596828, "relation_to_type": "type", "validated": true, "ani": 80.0909, "matched_fragments": 787, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus soli", "strain": "strain=DSM 21800", "accession": "GCA_900105385.1", "taxid": 630515, "species_taxid": 630515, "relation_to_type": "type", "validated": true, "ani": 79.7264, "matched_fragments": 815, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus kandeliicorticis", "strain": "strain=DSM 100723", "accession": "GCA_014137855.1", "taxid": 1759536, "species_taxid": 1759536, "relation_to_type": "type", "validated": true, "ani": 78.5946, "matched_fragments": 548, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus panaciterrae", "strain": "strain=DSM 18662", "accession": "GCA_016907535.1", "taxid": 400768, "species_taxid": 400768, "relation_to_type": "type", "validated": true, "ani": 78.1361, "matched_fragments": 410, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus parietis", "strain": "strain=DSM 22083", "accession": "GCA_013407955.1", "taxid": 682979, "species_taxid": 682979, "relation_to_type": "type", "validated": true, "ani": 78.1134, "matched_fragments": 540, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus phosphovorus", "strain": "strain=NM-1", "accession": "GCA_000270245.1", "taxid": 29405, "species_taxid": 29405, "relation_to_type": "type", "validated": true, "ani": 78.0232, "matched_fragments": 363, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus sagamiharensis", "strain": "strain=DSM 21743", "accession": "GCA_900105785.1", "taxid": 546874, "species_taxid": 546874, "relation_to_type": "type", "validated": true, "ani": 77.9892, "matched_fragments": 395, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus speluncae", "strain": "strain=SYSU K12189", "accession": "GCA_009299835.1", "taxid": 2594267, "species_taxid": 2594267, "relation_to_type": "type", "validated": true, "ani": 77.901, "matched_fragments": 548, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus cholistanensis", "strain": "strain=F435", "accession": "GCA_009742705.1", "taxid": 2656650, "species_taxid": 2656650, "relation_to_type": "type", "validated": true, "ani": 77.8116, "matched_fragments": 378, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enemella evansiae", "strain": "strain=NML 020265", "accession": "GCA_002250705.1", "taxid": 2016499, "species_taxid": 2016499, "relation_to_type": "type", "validated": true, "ani": 77.6765, "matched_fragments": 355, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 77.5832, "matched_fragments": 362, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Naumannella cuiyingiana", "strain": "strain=DSM 103164", "accession": "GCA_013408305.1", "taxid": 1347891, "species_taxid": 1347891, "relation_to_type": "type", "validated": true, "ani": 77.5174, "matched_fragments": 331, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.0939, "matched_fragments": 328, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 77.085, "matched_fragments": 336, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 77.0301, "matched_fragments": 341, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 76.7772, "matched_fragments": 324, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014646195.1", "gtdb_species": "s__Microlunatus_A endophyticus", "ani": 100.0, "matched_fragments": 1681, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009707365.1", "gtdb_species": "s__Microlunatus_A sp009707365", "ani": 81.3249, "matched_fragments": 968, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013408315.1", "gtdb_species": "s__Microlunatus_A terrae", "ani": 80.5427, "matched_fragments": 811, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007362775.1", "gtdb_species": "s__Microlunatus_A sp007362775", "ani": 80.133, "matched_fragments": 781, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105385.1", "gtdb_species": "s__Microlunatus_A soli", "ani": 79.746, "matched_fragments": 812, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014137855.1", "gtdb_species": "s__Friedmanniella_A endophytica", "ani": 78.5909, "matched_fragments": 549, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907535.1", "gtdb_species": "s__Microlunatus_C panaciterrae", "ani": 78.1479, "matched_fragments": 408, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000270245.1", "gtdb_species": "s__Microlunatus phosphovorus", "ani": 78.0229, "matched_fragments": 363, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105785.1", "gtdb_species": "s__Friedmanniella sagamiharensis", "ani": 77.974, "matched_fragments": 398, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009299835.1", "gtdb_species": "s__Microlunatus_B speluncae", "ani": 77.9073, "matched_fragments": 546, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902805915.1", "gtdb_species": "s__CADCUO01 sp902805915", "ani": 77.5161, "matched_fragments": 253, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__CADCUO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.184, "cell_length": -0.184, "doubling_h": 1.113, "growth_tmp": 28.0, "optimum_tmp": 28.416, "optimum_ph": 7.062, "genome_size": 6208018.125, "gc_content": 67.3, "coding_genes": 5145.333, "rRNA16S_genes": 1.0, "tRNA_genes": 46.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.833, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.166, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Microlunatus", "endophyticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }