{ "type": "genome", "identifier": "GCF_014646215.1", "organism": "Nakamurella endophytica", "title": "Nakamurella endophytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646215.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245197", "wgs_master": "BMNA00000000.1", "refseq_category": "reference genome", "taxid": "1748367", "species_taxid": "1748367", "organism_name": "Nakamurella endophytica", "infraspecific_name": "strain=CGMCC 4.7308", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464621v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/215/GCF_014646215.1_ASM1464621v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4937361", "genome_size_ungapped": "4937210", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646215.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4369", "protein_coding_gene_count": "4269", "non_coding_gene_count": "52", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Nakamurella endophytica" ], "sample_taxid": [ "1748367" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.292 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4937361", "Number of Sequences": "30", "Longest Sequences (bp)": "841887", "N50 (bp)": "710306", "Gap Ratio (%)": "0.003443", "GCcontent (%)": "74.0", "Number of CDSs": "4425", "Average Protein Length": "332.0", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nakamurella endophytica", "strain": "strain=CGMCC 4.7308", "accession": "GCA_014646215.1", "taxid": 1748367, "species_taxid": 1748367, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009707545.1", "gtdb_species": "s__Nakamurella sp009707545", "ani": 79.5557, "matched_fragments": 787, "total_fragments": 1632, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Nakamurellaceae;g__Nakamurella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016918035.1", "gtdb_species": "s__Nakamurella sp016918035", "ani": 78.9002, "matched_fragments": 627, "total_fragments": 1632, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Nakamurellaceae;g__Nakamurella", "ani_circumscription_radius": 95.0, 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