{ "type": "genome", "identifier": "GCF_014646315.1", "organism": "Micromonospora parathelypteridis", "title": "Micromonospora parathelypteridis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646315.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245203", "wgs_master": "BMNF00000000.1", "refseq_category": "reference genome", "taxid": "1839617", "species_taxid": "1839617", "organism_name": "Micromonospora parathelypteridis", "infraspecific_name": "strain=CGMCC 4.7347", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464631v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/315/GCF_014646315.1_ASM1464631v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7000622", "genome_size_ungapped": "6999519", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646315.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6406", "protein_coding_gene_count": "6251", "non_coding_gene_count": "92", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora parathelypteridis" ], "sample_taxid": [ "1839617" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.874 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7000622", "Number of Sequences": "27", "Longest Sequences (bp)": "1383417", "N50 (bp)": "1030950", "Gap Ratio (%)": "0.016070", "GCcontent (%)": "71.1", "Number of CDSs": "6393", "Average Protein Length": "327.3", "Coding Ratio (%)": "89.7", "Number of rRNAs": "2", "Number of tRNAs": "103", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora parathelypteridis", "strain": "strain=CGMCC 4.7347", "accession": "GCA_014646315.1", "taxid": 1839617, 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"relation_to_type": "type", "validated": true, "ani": 90.6203, "matched_fragments": 1839, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora jinlongensis", "strain": "strain=DSM 45876", "accession": "GCA_013410645.1", "taxid": 1287877, "species_taxid": 1287877, "relation_to_type": "type", "validated": true, "ani": 90.6037, "matched_fragments": 1805, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora zamorensis", "strain": "strain=DSM 45600", "accession": "GCA_900090275.1", "taxid": 709883, "species_taxid": 709883, "relation_to_type": "type", "validated": true, "ani": 90.5413, "matched_fragments": 1824, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora noduli", "strain": "strain=GUI43", "accession": "GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, 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"total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 89.2419, "matched_fragments": 1541, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora cremea", "strain": "strain=DSM 45599", "accession": "GCA_900143515.1", "taxid": 709881, "species_taxid": 709881, "relation_to_type": "type", "validated": true, "ani": 89.2389, "matched_fragments": 1742, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.3505, "matched_fragments": 1105, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 83.8339, "matched_fragments": 1386, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 83.6503, "matched_fragments": 1405, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.1356, "matched_fragments": 1314, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" } ], 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