{ "type": "genome", "identifier": "GCF_014646575.1", "organism": "Halopseudomonas pertucinogena", "title": "Halopseudomonas pertucinogena", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646575.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245223", "wgs_master": "BMNN00000000.1", "refseq_category": "reference genome", "taxid": "86175", "species_taxid": "86175", "organism_name": "Halopseudomonas pertucinogena", "infraspecific_name": "strain=JCM 11590", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464657v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/575/GCF_014646575.1_ASM1464657v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3065138", "genome_size_ungapped": "3064723", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646575.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2926", "protein_coding_gene_count": "2826", "non_coding_gene_count": "56", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas pertucinogena" ], "sample_taxid": [ "86175" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.854 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3065138", "Number of Sequences": "24", "Longest Sequences (bp)": "1107422", "N50 (bp)": "582132", "Gap Ratio (%)": "0.013539", "GCcontent (%)": "62.7", "Number of CDSs": "2856", "Average Protein Length": "325.4", "Coding Ratio (%)": "91.0", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", "taxid": 653930, "species_taxid": 653930, 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