{
    "type": "genome",
    "identifier": "GCF_014646595.1",
    "organism": "Pseudomonas avellanae",
    "title": "Pseudomonas avellanae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014646595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245224",
        "wgs_master": "BMNO00000000.1",
        "refseq_category": "na",
        "taxid": "46257",
        "species_taxid": "46257",
        "organism_name": "Pseudomonas avellanae",
        "infraspecific_name": "strain=JCM 11937",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464659v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014646595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/595/GCF_014646595.1_ASM1464659v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6030024",
        "genome_size_ungapped": "6029847",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "412",
        "contig_count": "412",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014646595.1-RS_2024_08_15",
        "annotation_date": "2024-08-15",
        "total_gene_count": "5672",
        "protein_coding_gene_count": "5107",
        "non_coding_gene_count": "55",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas avellanae"
        ],
        "sample_taxid": [
            "46257"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.706 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.05,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6030024",
        "Number of Sequences": "412",
        "Longest Sequences (bp)": "138797",
        "N50 (bp)": "42412",
        "Gap Ratio (%)": "0.002935",
        "GCcontent (%)": "58.5",
        "Number of CDSs": "5482",
        "Average Protein Length": "308.7",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pseudomonas avellanae",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas avellanae",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8929,
                "matched_fragments": 1645,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
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                "matched_fragments": 1789,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas syringae",
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                "accession": "GCA_000658965.1",
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                "species_taxid": 317,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae",
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                "accession": "GCA_000233835.2",
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                "validated": true,
                "ani": 97.252,
                "matched_fragments": 1369,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
                "strain": "strain=ICMP529",
                "accession": "GCA_001400335.1",
                "taxid": 251701,
                "species_taxid": 251701,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 96.938,
                "matched_fragments": 1491,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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                "accession": "GCA_000935765.1",
                "taxid": 251701,
                "species_taxid": 251701,
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                "matched_fragments": 1642,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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            },
            {
                "organism_name": "Pseudomonas amygdali",
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                "accession": "GCA_022828345.1",
                "taxid": 47877,
                "species_taxid": 47877,
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                "ani": 88.0258,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
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                "status": "below_threshold"
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            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
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                "species_taxid": 2740518,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "status": "below_threshold"
            }
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                "accession": "GCF_000444135.1",
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}