{ "type": "genome", "identifier": "GCF_014646635.1", "organism": "Lentibacillus kapialis", "title": "Lentibacillus kapialis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646635.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245228", "wgs_master": "BMNQ00000000.1", "refseq_category": "reference genome", "taxid": "340214", "species_taxid": "340214", "organism_name": "Lentibacillus kapialis", "infraspecific_name": "strain=JCM 12580", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464663v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/635/GCF_014646635.1_ASM1464663v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3640324", "genome_size_ungapped": "3639559", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "148", "contig_count": "148", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646635.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3629", "protein_coding_gene_count": "3497", "non_coding_gene_count": "79", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentibacillus kapialis" ], "sample_taxid": [ "340214" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.039 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3640324", "Number of Sequences": "148", "Longest Sequences (bp)": "221111", "N50 (bp)": "47925", "Gap Ratio (%)": "0.021015", "GCcontent (%)": "42.0", "Number of CDSs": "3524", "Average Protein Length": "284.4", "Coding Ratio (%)": "82.6", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lentibacillus kapialis", "strain": "strain=JCM 12580", "accession": "GCA_014646635.1", "taxid": 340214, "species_taxid": 340214, 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"status": "below_threshold" }, { "organism_name": "Virgibacillus subterraneus", "strain": "strain=CGMCC 1.7734", "accession": "GCA_900110695.1", "taxid": 621109, "species_taxid": 621109, "relation_to_type": "type", "validated": true, "ani": 76.7431, "matched_fragments": 132, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014646635.1", "gtdb_species": "s__Lentibacillus kapialis", "ani": 100.0, "matched_fragments": 1140, "total_fragments": 1147, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Lentibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000224785.1", "gtdb_species": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lentibacillus", "kapialis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }