{ "type": "genome", "identifier": "GCF_014646675.1", "organism": "Lutibacter litoralis", "title": "Lutibacter litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646675.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245230", "wgs_master": "BMNS00000000.1", "refseq_category": "reference genome", "taxid": "321268", "species_taxid": "321268", "organism_name": "Lutibacter litoralis", "infraspecific_name": "strain=JCM 13034", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464667v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/675/GCF_014646675.1_ASM1464667v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3593658", "genome_size_ungapped": "3592524", "gc_percent": "30.000000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646675.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3154", "protein_coding_gene_count": "3091", "non_coding_gene_count": "47", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Lutibacter litoralis" ], "sample_taxid": [ "321268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.987 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3593658", "Number of Sequences": "28", "Longest Sequences (bp)": "634169", "N50 (bp)": "408952", "Gap Ratio (%)": "0.031556", "GCcontent (%)": "30.1", "Number of CDSs": "3114", "Average Protein Length": "344.4", "Coding Ratio (%)": "89.5", "Number of rRNAs": "2", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lutibacter oceani", "strain": "strain=325-5", "accession": "GCA_003384935.1", "taxid": 1853311, "species_taxid": 1853311, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 77.3258, "matched_fragments": 252, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 77.2519, "matched_fragments": 283, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.2042, "matched_fragments": 230, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 76.903, "matched_fragments": 237, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum luteum", "strain": "strain=SM1352", "accession": "GCA_003449015.1", "taxid": 1548456, "species_taxid": 1548456, "relation_to_type": "type", "validated": true, "ani": 76.7626, "matched_fragments": 216, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014646675.1", "gtdb_species": "s__Lutibacter litoralis", "ani": 100.0, "matched_fragments": 1183, "total_fragments": 1184, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lutibacter", "litoralis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }