{ "type": "genome", "identifier": "GCF_014646695.1", "organism": "Sphaerisporangium melleum", "title": "Sphaerisporangium melleum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646695.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245231", "wgs_master": "BMNT00000000.1", "refseq_category": "na", "taxid": "321316", "species_taxid": "321316", "organism_name": "Sphaerisporangium melleum", "infraspecific_name": "strain=JCM 13064", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464669v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/695/GCF_014646695.1_ASM1464669v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8681493", "genome_size_ungapped": "8669642", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "167", "contig_count": "167", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646695.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "7652", "protein_coding_gene_count": "7427", "non_coding_gene_count": "69", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphaerisporangium melleum" ], "sample_taxid": [ "321316" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.336 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 1.97, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8681493", "Number of Sequences": "167", "Longest Sequences (bp)": "349473", "N50 (bp)": "172998", "Gap Ratio (%)": "0.136509", "GCcontent (%)": "71.6", "Number of CDSs": "7518", "Average Protein Length": "327.2", "Coding Ratio (%)": "85.0", "Number of rRNAs": "2", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphaerisporangium melleum", "strain": "strain=JCM 13064", "accession": "GCA_014646695.1", "taxid": 321316, "species_taxid": 321316, 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"matched_fragments": 1524, "total_fragments": 2821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rufum", "strain": "strain=NBRC 109079", "accession": "GCA_016863395.1", "taxid": 1381558, "species_taxid": 1381558, "relation_to_type": "type", "validated": true, "ani": 82.5702, "matched_fragments": 1541, "total_fragments": 2821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rubeum", "strain": "strain=DSM 44936", "accession": "GCA_014207705.1", "taxid": 321317, "species_taxid": 321317, "relation_to_type": "type", "validated": true, "ani": 82.1746, "matched_fragments": 1457, "total_fragments": 2821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 80.1998, "matched_fragments": 1272, 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"status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.7715, "matched_fragments": 1329, "total_fragments": 2821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium album", "strain": "strain=DSM 43023", "accession": "GCA_014203795.1", "taxid": 47479, "species_taxid": 47479, "relation_to_type": "type", "validated": true, "ani": 79.6925, "matched_fragments": 1167, "total_fragments": 2821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 79.0578, "matched_fragments": 1245, "total_fragments": 2821, "ani_threshold": 95, "status": "below_threshold" } ], 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