{ "tc_result": [ { "organism_name": "Legionella impletisoli", "strain": "strain=JCM 13919", "accession": "GCA_014646855.1", "taxid": 343510, "species_taxid": 343510, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 819, "total_fragments": 819, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella impletisoli", "strain": "strain=OA1-1", "accession": "GCA_900639875.1", "taxid": 343510, "species_taxid": 343510, "relation_to_type": "type", "validated": true, "ani": 99.998, "matched_fragments": 817, "total_fragments": 819, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella yabuuchiae", "strain": "strain=OA1-2", "accession": "GCA_900640115.1", "taxid": 376727, "species_taxid": 376727, "relation_to_type": "type", "validated": true, "ani": 79.8907, "matched_fragments": 446, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nagasakiensis", "strain": "strain=JCM 15315", "accession": "GCA_900639915.1", "taxid": 535290, "species_taxid": 535290, "relation_to_type": "type", "validated": true, "ani": 77.8378, "matched_fragments": 109, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_001467525.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 76.74, "matched_fragments": 62, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_1480", "accession": "GCA_019930885.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 76.7249, "matched_fragments": 63, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella clemsonensis", "strain": "strain=CDC-D5610", "accession": "GCA_002240035.1", "taxid": 1867846, "species_taxid": 1867846, "relation_to_type": "type", "validated": true, "ani": 76.6313, "matched_fragments": 60, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=1224", "accession": "GCA_900639935.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 76.4868, "matched_fragments": 63, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella drancourtii", "strain": "strain=LLAP12", "accession": "GCA_000162755.2", "taxid": 168933, "species_taxid": 168933, "relation_to_type": "type", "validated": true, "ani": 76.2736, "matched_fragments": 68, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fallonii", "strain": "strain=LLAP-10", "accession": "GCA_000953135.1", "taxid": 96230, "species_taxid": 96230, "relation_to_type": "type", "validated": true, "ani": 76.155, "matched_fragments": 58, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900639875.1", "gtdb_species": "s__Legionella_A impletisoli", "ani": 99.998, "matched_fragments": 817, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900640115.1", "gtdb_species": "s__Legionella_A yabuuchiae", "ani": 79.877, "matched_fragments": 448, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900639915.1", "gtdb_species": "s__Legionella_A nagasakiensis", "ani": 77.8378, "matched_fragments": 109, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013697725.1", "gtdb_species": "s__Tatlockia sp013697725", "ani": 76.8592, "matched_fragments": 57, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003989735.1", "gtdb_species": "s__Legionella sp003989735", "ani": 76.7735, "matched_fragments": 59, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900452385.1", "gtdb_species": "s__Tatlockia donaldsonii", "ani": 76.7336, "matched_fragments": 61, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001467525.1", "gtdb_species": "s__Legionella anisa", "ani": 76.7031, "matched_fragments": 63, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002240035.1", "gtdb_species": "s__Tatlockia clemsonensis", "ani": 76.6667, "matched_fragments": 59, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001467895.1", "gtdb_species": "s__Tatlockia nautarum", "ani": 76.4129, "matched_fragments": 63, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013697645.1", "gtdb_species": "s__Tatlockia sp013697645", "ani": 76.3176, "matched_fragments": 50, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001467585.1", "gtdb_species": "s__Tatlockia drozanskii", "ani": 76.2987, "matched_fragments": 61, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000162755.2", "gtdb_species": "s__Legionella drancourtii", "ani": 76.2736, "matched_fragments": 68, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953135.1", "gtdb_species": "s__Legionella fallonii", "ani": 76.155, "matched_fragments": 58, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }