{ "type": "genome", "identifier": "GCF_014646895.1", "organism": "Deinococcus roseus", "title": "Deinococcus roseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014646895.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245246", "wgs_master": "BMOD00000000.1", "refseq_category": "reference genome", "taxid": "392414", "species_taxid": "392414", "organism_name": "Deinococcus roseus", "infraspecific_name": "strain=JCM 14370", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464689v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014646895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/646/895/GCF_014646895.1_ASM1464689v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5686891", "genome_size_ungapped": "5686841", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "99", "contig_count": "99", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014646895.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5338", "protein_coding_gene_count": "5223", "non_coding_gene_count": "75", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus roseus" ], "sample_taxid": [ "392414" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.582 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5686891", "Number of Sequences": "99", "Longest Sequences (bp)": "602981", "N50 (bp)": "181530", "Gap Ratio (%)": "0.000879", "GCcontent (%)": "56.2", "Number of CDSs": "5289", "Average Protein Length": "312.2", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus roseus", "strain": "strain=JCM 14370", "accession": "GCA_014646895.1", "taxid": 392414, "species_taxid": 392414, 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"organism_name": "Deinococcus radiodurans", "strain": "strain=R1", "accession": "GCA_000008565.1", "taxid": 1299, "species_taxid": 1299, "relation_to_type": "type", "validated": true, "ani": 76.0651, "matched_fragments": 77, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aquatilis", "strain": "strain=DSM 23025", "accession": "GCA_000378445.1", "taxid": 519440, "species_taxid": 519440, "relation_to_type": "type", "validated": true, "ani": 75.9943, "matched_fragments": 106, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus frigens", "strain": "strain=DSM 12807", "accession": "GCA_000701425.1", "taxid": 249403, "species_taxid": 249403, "relation_to_type": "type", "validated": true, "ani": 75.939, "matched_fragments": 94, "total_fragments": 1848, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Deinococcus", "roseus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }