{ "type": "genome", "identifier": "GCF_014647235.1", "organism": "Haloarcula pellucida", "title": "Haloarcula pellucida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647235.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245267", "wgs_master": "BMOU00000000.1", "refseq_category": "na", "taxid": "1427151", "species_taxid": "1427151", "organism_name": "Haloarcula pellucida", "infraspecific_name": "strain=JCM 17820", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464723v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/235/GCF_014647235.1_ASM1464723v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3961411", "genome_size_ungapped": "3961411", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647235.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4118", "protein_coding_gene_count": "4004", "non_coding_gene_count": "61", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloarcula pellucida" ], "sample_taxid": [ "1427151" ], "sample_host_organism": [], 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"mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014647415.1", "gtdb_species": "s__Haloarcula sebkhae", "ani": 80.5117, "matched_fragments": 665, "total_fragments": 1306, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula", "ani_circumscription_radius": 95.2413, "mean_intra_species_ani": "95.97", "min_intra_species_ani": "95.97", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.169, "cell_length": 0.171, "doubling_h": 0.771, "growth_tmp": 37.833, "optimum_tmp": 40.964, "optimum_ph": 6.787, "genome_size": 4174401.837, "gc_content": 59.226, "coding_genes": 3993.8, "rRNA16S_genes": 3.166, "tRNA_genes": 47.666, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.333, "range_salinity": 1.0, "facultative_respiration": 0.0, 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