{
    "type": "genome",
    "identifier": "GCF_014647475.1",
    "organism": "Halocalculus aciditolerans",
    "title": "Halocalculus aciditolerans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014647475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245280",
        "wgs_master": "BMPG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1383812",
        "species_taxid": "1383812",
        "organism_name": "Halocalculus aciditolerans",
        "infraspecific_name": "strain=JCM 19596",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464747v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014647475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/475/GCF_014647475.1_ASM1464747v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3380345",
        "genome_size_ungapped": "3380345",
        "gc_percent": "67.000000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014647475.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3520",
        "protein_coding_gene_count": "3431",
        "non_coding_gene_count": "49",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halocalculus aciditolerans"
        ],
        "sample_taxid": [
            "1383812"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.911 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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    "_dfast": {
        "Total Sequence Length (bp)": "3380345",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "1250801",
        "N50 (bp)": "875382",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.9",
        "Number of CDSs": "3498",
        "Average Protein Length": "282.2",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Halarchaeum grantii",
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                "species_taxid": 1193105,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Halarchaeum rubridurum",
                "strain": "strain=JCM 16108",
                "accession": "GCA_014647115.1",
                "taxid": 489911,
                "species_taxid": 489911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9563,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Halarchaeum rubridurum",
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                "accession": "GCA_017873775.1",
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                "species_taxid": 489911,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacterium hubeiense",
                "strain": "strain=JI20-1",
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                "species_taxid": 1407499,
                "relation_to_type": "type",
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                "ani": 79.581,
                "matched_fragments": 494,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halarchaeum acidiphilum",
                "strain": "strain=JCM 16109",
                "accession": "GCA_000474235.1",
                "taxid": 489138,
                "species_taxid": 489138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3418,
                "matched_fragments": 466,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacterium litoreum",
                "strain": "strain=ZS-54-S2",
                "accession": "GCA_021233415.1",
                "taxid": 2039234,
                "species_taxid": 2039234,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9635,
                "matched_fragments": 497,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronomonas salina",
                "strain": "strain=YPL13",
                "accession": "GCA_013391105.1",
                "taxid": 1710540,
                "species_taxid": 1710540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3551,
                "matched_fragments": 395,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_014647475.1",
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                "total_fragments": 1116,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halocalculus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halarchaeum",
                "ani_circumscription_radius": 95.0,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014647155.1",
                "gtdb_species": "s__Halarchaeum nitratireducens",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halarchaeum",
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            },
            {
                "accession": "GCF_017874335.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halarchaeum",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_001488575.1",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_011734195.1",
                "gtdb_species": "s__Halobacterium sp011734195",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Halocalculus",
        "aciditolerans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}