{ "type": "genome", "identifier": "GCF_014647515.1", "organism": "Dactylosporangium sucinum", "title": "Dactylosporangium sucinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647515.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245282", "wgs_master": "BMPI00000000.1", "refseq_category": "reference genome", "taxid": "1424081", "species_taxid": "1424081", "organism_name": "Dactylosporangium sucinum", "infraspecific_name": "strain=JCM 19831", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464751v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/515/GCF_014647515.1_ASM1464751v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12103263", "genome_size_ungapped": "12093779", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "221", "contig_count": "221", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647515.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "11312", "protein_coding_gene_count": "11028", "non_coding_gene_count": "84", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Dactylosporangium sucinum" ], "sample_taxid": [ "1424081" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "3.222 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12103263", "Number of Sequences": "221", "Longest Sequences (bp)": "346783", "N50 (bp)": "134443", "Gap Ratio (%)": "0.078359", "GCcontent (%)": "72.4", "Number of CDSs": "11132", "Average Protein Length": "323.8", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "101", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dactylosporangium sucinum", "strain": "strain=JCM 19831", "accession": "GCA_014647515.1", "taxid": 1424081, "species_taxid": 1424081, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3912, "total_fragments": 3927, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 84.8864, "matched_fragments": 2249, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium roseum", "strain": "strain=NRRL B-16295", "accession": "GCA_025264685.1", "taxid": 47989, "species_taxid": 47989, "relation_to_type": "type", "validated": true, "ani": 84.3255, "matched_fragments": 1792, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 82.6341, "matched_fragments": 2243, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_000716715.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 82.628, "matched_fragments": 2204, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 81.6097, "matched_fragments": 2060, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium vinaceum", "strain": "strain=NRRL B-16297", "accession": "GCA_019904175.1", "taxid": 53362, "species_taxid": 53362, "relation_to_type": "type", "validated": true, "ani": 81.4826, "matched_fragments": 2151, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=TMS7", "accession": "GCA_010671825.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 78.16, "matched_fragments": 1232, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=DSM 101760", "accession": "GCA_009671205.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 78.1345, "matched_fragments": 1235, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 78.1001, "matched_fragments": 1048, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora methionotrophica", "strain": "strain=NBRC 14553", "accession": "GCA_016862655.1", "taxid": 121620, "species_taxid": 121620, "relation_to_type": "type", "validated": true, "ani": 77.5834, "matched_fragments": 1298, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pilimelia anulata", "strain": "strain=JCM 3090", "accession": "GCA_014647895.1", "taxid": 53371, "species_taxid": 53371, "relation_to_type": "type", "validated": true, "ani": 77.2769, "matched_fragments": 1015, "total_fragments": 3927, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014647515.1", "gtdb_species": "s__Dactylosporangium sucinum", "ani": 100.0, "matched_fragments": 3912, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Dactylosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000716715.1", "gtdb_species": "s__Dactylosporangium aurantiacum", "ani": 82.6305, "matched_fragments": 2207, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Dactylosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862795.1", "gtdb_species": "s__Dactylosporangium siamense", "ani": 82.2294, "matched_fragments": 2238, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Dactylosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003434305.1", "gtdb_species": "s__Micromonospora sp003434305", "ani": 78.231, "matched_fragments": 1240, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863255.1", "gtdb_species": "s__Planosporangium mesophilum", "ani": 78.2101, "matched_fragments": 1115, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Planosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014205165.1", "gtdb_species": "s__Micromonospora carbonacea", "ani": 78.1156, "matched_fragments": 1324, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.5545, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000982955.1", "gtdb_species": "s__Micromonospora sp000982955", "ani": 78.1035, "matched_fragments": 1161, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900091595.1", "gtdb_species": "s__Micromonospora haikouensis", "ani": 78.0565, "matched_fragments": 1335, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.5545, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003664255.1", "gtdb_species": "s__Micromonospora sp003664255", "ani": 77.9653, "matched_fragments": 1286, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900090295.1", "gtdb_species": "s__Micromonospora coxensis", "ani": 77.9259, "matched_fragments": 1244, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004348525.1", "gtdb_species": "s__Micromonospora sp004348525", "ani": 77.8872, "matched_fragments": 1039, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018324255.1", "gtdb_species": "s__Polymorphospora rubra", "ani": 77.8457, "matched_fragments": 1284, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Polymorphospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003610785.1", "gtdb_species": "s__Micromonospora globbae", "ani": 77.8382, "matched_fragments": 1226, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002140155.1", "gtdb_species": "s__Micromonospora sp002140155", "ani": 77.8325, "matched_fragments": 1217, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863615.1", "gtdb_species": "s__Virgisporangium aliadipatigenens", "ani": 77.6873, "matched_fragments": 1433, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Virgisporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862915.1", "gtdb_species": "s__Plantactinospora endophytica", "ani": 77.5814, "matched_fragments": 1387, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Plantactinospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000717135.1", "gtdb_species": "s__Catenuloplanes japonicus", "ani": 77.3622, "matched_fragments": 1413, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Catenuloplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014647895.1", "gtdb_species": "s__Pilimelia anulata", "ani": 77.2569, "matched_fragments": 1025, "total_fragments": 3927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Pilimelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.056, "cell_length": 0.243, "doubling_h": null, "growth_tmp": 27.8, "optimum_tmp": 29.583, "optimum_ph": 7.025, "genome_size": 7292911.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.833, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.75, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.25, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dactylosporangium", "sucinum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }