{ "type": "genome", "identifier": "GCF_014647535.1", "organism": "Thermus composti", "title": "Thermus composti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647535.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245283", "wgs_master": "BMPJ00000000.1", "refseq_category": "reference genome", "taxid": "532059", "species_taxid": "532059", "organism_name": "Thermus composti", "infraspecific_name": "strain=JCM 19902", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464753v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/535/GCF_014647535.1_ASM1464753v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2080570", "genome_size_ungapped": "2080570", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647535.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "2291", "protein_coding_gene_count": "2185", "non_coding_gene_count": "54", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus composti" ], "sample_taxid": [ "532059" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.554 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2080570", "Number of Sequences": "64", "Longest Sequences (bp)": "147640", "N50 (bp)": "82383", "Gap Ratio (%)": "0.000336", "GCcontent (%)": "67.7", "Number of CDSs": "2224", "Average Protein Length": "295.0", "Coding Ratio (%)": "94.6", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus thermophilus", "strain": "strain=JCM10941", "accession": "GCA_019973715.1", "taxid": 274, "species_taxid": 274, 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"organism_name": "Thermus igniterrae", "strain": "strain=ATCC 700962", "accession": "GCA_000376265.1", "taxid": 88189, "species_taxid": 88189, "relation_to_type": "type", "validated": true, "ani": 85.8656, "matched_fragments": 529, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus islandicus", "strain": "strain=DSM 21543", "accession": "GCA_000421625.1", "taxid": 540988, "species_taxid": 540988, "relation_to_type": "type", "validated": true, "ani": 85.6333, "matched_fragments": 517, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermamylovorans", "strain": "strain=CFH 72773T", "accession": "GCA_004307015.1", "taxid": 2509362, "species_taxid": 2509362, "relation_to_type": "type", "validated": true, "ani": 85.5861, "matched_fragments": 541, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus sediminis", "strain": 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.698, "doubling_h": -0.009, "growth_tmp": 45.0, "optimum_tmp": 67.5, "optimum_ph": 7.0, "genome_size": 2282082.599, "gc_content": 67.776, "coding_genes": 2233.787, "rRNA16S_genes": 1.833, "tRNA_genes": 48.633, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thermus", "composti" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }