{ "type": "genome", "identifier": "GCF_014647555.1", "organism": "Shewanella putrefaciens", "title": "Shewanella putrefaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245284", "wgs_master": "BMPK00000000.1", "refseq_category": "na", "taxid": "24", "species_taxid": "24", "organism_name": "Shewanella putrefaciens", "infraspecific_name": "strain=JCM 20190", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464755v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/555/GCF_014647555.1_ASM1464755v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4378406", "genome_size_ungapped": "4377021", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647555.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3934", "protein_coding_gene_count": "3742", "non_coding_gene_count": "106", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella putrefaciens" ], "sample_taxid": [ "24" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.249 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4378406", "Number of Sequences": "29", "Longest Sequences (bp)": "794403", "N50 (bp)": "510968", "Gap Ratio (%)": "0.031633", "GCcontent (%)": "44.3", "Number of CDSs": "3864", "Average Protein Length": "323.6", "Coding Ratio (%)": "85.7", "Number of rRNAs": "0", "Number of tRNAs": "100", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella putrefaciens", "strain": "strain=JCM 20190", "accession": "GCA_014647555.1", "taxid": 24, "species_taxid": 24, 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"status": "below_threshold" }, { "organism_name": "Shewanella glacialipiscicola", "strain": "strain=LMG 23744", "accession": "GCA_023283485.1", "taxid": 614069, "species_taxid": 614069, "relation_to_type": "type", "validated": true, "ani": 82.4882, "matched_fragments": 889, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella oneidensis", "strain": "strain=MR-1", "accession": "GCA_013267215.1", "taxid": 70863, "species_taxid": 70863, "relation_to_type": "type", "validated": true, "ani": 81.9896, "matched_fragments": 923, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=CCUG 60900", "accession": "GCA_023283775.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 81.6686, "matched_fragments": 903, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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