{ "type": "genome", "identifier": "GCF_014647575.1", "organism": "Shewanella hanedai", "title": "Shewanella hanedai", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647575.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245285", "wgs_master": "BMPL00000000.1", "refseq_category": "na", "taxid": "25", "species_taxid": "25", "organism_name": "Shewanella hanedai", "infraspecific_name": "strain=JCM 20706", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464757v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/575/GCF_014647575.1_ASM1464757v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5924036", "genome_size_ungapped": "5915625", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "112", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647575.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5108", "protein_coding_gene_count": "4949", "non_coding_gene_count": "89", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella hanedai" ], "sample_taxid": [ "25" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.694 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5924036", "Number of Sequences": "112", "Longest Sequences (bp)": "370399", "N50 (bp)": "123646", "Gap Ratio (%)": "0.141981", "GCcontent (%)": "43.0", "Number of CDSs": "4996", "Average Protein Length": "331.4", "Coding Ratio (%)": "83.8", "Number of rRNAs": "1", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella hanedai", "strain": "strain=JCM 20706", "accession": "GCA_014647575.1", "taxid": 25, "species_taxid": 25, 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"organism_name": "Shewanella olleyana", "strain": "strain=LMG 21437", "accession": "GCA_023283825.1", "taxid": 135626, "species_taxid": 135626, "relation_to_type": "type", "validated": true, "ani": 77.706, "matched_fragments": 242, "total_fragments": 1920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parashewanella hymeniacidonis", "strain": "strain=202IG2-18", "accession": "GCA_016900895.1", "taxid": 2807618, "species_taxid": 2807618, "relation_to_type": "type", "validated": true, "ani": 77.5515, "matched_fragments": 131, "total_fragments": 1920, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007197645.1", "gtdb_species": "s__Shewanella hanedai", "ani": 99.9886, "matched_fragments": 1910, "total_fragments": 1920, "gtdb_taxonomy": 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