{ "type": "genome", "identifier": "GCF_014647655.1", "organism": "Deinococcus malanensis", "title": "Deinococcus malanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647655.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245293", "wgs_master": "BMPP00000000.1", "refseq_category": "reference genome", "taxid": "1706855", "species_taxid": "1706855", "organism_name": "Deinococcus malanensis", "infraspecific_name": "strain=JCM 30331", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464765v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/655/GCF_014647655.1_ASM1464765v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4445242", "genome_size_ungapped": "4444267", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647655.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4307", "protein_coding_gene_count": "4171", "non_coding_gene_count": "69", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus malanensis" ], "sample_taxid": [ "1706855" ], "sample_host_organism": [], 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"organism_name": "Deinococcus xianganensis", "strain": "strain=Y35", "accession": "GCA_009834985.1", "taxid": 1507289, "species_taxid": 1507289, "relation_to_type": "type", "validated": true, "ani": 78.9984, "matched_fragments": 483, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiopugnans", "strain": "strain=DSM 12027", "accession": "GCA_014201625.1", "taxid": 57497, "species_taxid": 57497, "relation_to_type": "type", "validated": true, "ani": 78.997, "matched_fragments": 528, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus arenae", "strain": "strain=JCM 31047", "accession": "GCA_014647995.1", "taxid": 1452751, "species_taxid": 1452751, "relation_to_type": "type", "validated": true, "ani": 78.987, "matched_fragments": 538, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus seoulensis", "strain": 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