{ "type": "genome", "identifier": "GCF_014647795.1", "organism": "Actinoplanes campanulatus", "title": "Actinoplanes campanulatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647795.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245300", "wgs_master": "BMPW00000000.1", "refseq_category": "na", "taxid": "113559", "species_taxid": "113559", "organism_name": "Actinoplanes campanulatus", "infraspecific_name": "strain=JCM 3059", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464779v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/795/GCF_014647795.1_ASM1464779v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9976112", "genome_size_ungapped": "9976112", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "102", "contig_count": "102", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647795.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "9337", "protein_coding_gene_count": "9117", "non_coding_gene_count": "89", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes campanulatus" ], "sample_taxid": [ "113559" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.680 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9976112", "Number of Sequences": "102", "Longest Sequences (bp)": "1098338", "N50 (bp)": "311329", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "9306", "Average Protein Length": "320.6", "Coding Ratio (%)": "89.7", "Number of rRNAs": "0", "Number of tRNAs": "94", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes campanulatus", "strain": "strain=JCM 3059", "accession": "GCA_014647795.1", "taxid": 113559, "species_taxid": 113559, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes brasiliensis", "strain": "strain=NBRC 13938", "accession": "GCA_016862015.1", "taxid": 52695, "species_taxid": 52695, "relation_to_type": "type", "validated": true, "ani": 80.6576, "matched_fragments": 1500, "total_fragments": 3282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes brasiliensis", "strain": "strain=DSM 43805", "accession": "GCA_004362215.1", "taxid": 52695, "species_taxid": 52695, "relation_to_type": "type", "validated": true, "ani": 80.5857, "matched_fragments": 1547, "total_fragments": 3282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes friuliensis", "strain": "strain=DSM 7358", "accession": "GCA_000494755.1", "taxid": 196914, "species_taxid": 196914, "relation_to_type": "type", "validated": true, "ani": 79.8461, "matched_fragments": 1423, "total_fragments": 3282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 79.0519, "matched_fragments": 940, "total_fragments": 3282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 78.7615, "matched_fragments": 1136, "total_fragments": 3282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora paridis", "strain": "strain=NEAU-CL2", "accession": "GCA_009720365.1", "taxid": 1617086, "species_taxid": 1617086, "relation_to_type": "type", "validated": true, "ani": 77.9062, "matched_fragments": 1124, "total_fragments": 3282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.666, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinoplanes", "campanulatus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }