{ "type": "genome", "identifier": "GCF_014647915.1", "organism": "Pilimelia terevasa", "title": "Pilimelia terevasa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014647915.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245307", "wgs_master": "BMQC00000000.1", "refseq_category": "reference genome", "taxid": "53372", "species_taxid": "53372", "organism_name": "Pilimelia terevasa", "infraspecific_name": "strain=JCM 3091", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464791v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014647915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/647/915/GCF_014647915.1_ASM1464791v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4535755", "genome_size_ungapped": "4535755", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014647915.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4153", "protein_coding_gene_count": "4018", "non_coding_gene_count": "57", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pilimelia terevasa" ], "sample_taxid": [ "53372" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.194 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4535755", "Number of Sequences": "42", "Longest Sequences (bp)": "613913", "N50 (bp)": "298494", "Gap Ratio (%)": "0.000066", "GCcontent (%)": "74.3", "Number of CDSs": "4147", "Average Protein Length": "324.5", "Coding Ratio (%)": "89.0", "Number of rRNAs": "4", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pilimelia terevasa", "strain": "strain=JCM 3091", "accession": "GCA_014647915.1", "taxid": 53372, "species_taxid": 53372, 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78.9841, "matched_fragments": 718, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora olivasterospora", "strain": "strain=DSM 43868", "accession": "GCA_007830265.1", "taxid": 1880, "species_taxid": 1880, "relation_to_type": "type", "validated": true, "ani": 78.959, "matched_fragments": 725, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 78.9542, "matched_fragments": 710, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 78.9482, "matched_fragments": 628, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coxensis", "strain": "strain=DSM 45161", "accession": "GCA_900090295.1", "taxid": 356852, "species_taxid": 356852, "relation_to_type": "type", "validated": true, "ani": 78.9472, "matched_fragments": 759, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora viridifaciens", "strain": "strain=DSM 43909", "accession": "GCA_900091545.1", "taxid": 1881, "species_taxid": 1881, "relation_to_type": "type", "validated": true, "ani": 78.9361, "matched_fragments": 692, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora auratinigra", "strain": "strain=DSM 44815", "accession": "GCA_900089595.1", "taxid": 261654, "species_taxid": 261654, "relation_to_type": "type", "validated": true, "ani": 78.9243, "matched_fragments": 748, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 78.8373, "matched_fragments": 764, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora narathiwatensis", "strain": "strain=DSM 45248", "accession": "GCA_900089605.1", "taxid": 299146, "species_taxid": 299146, "relation_to_type": "type", "validated": true, "ani": 78.8333, "matched_fragments": 719, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora halophytica", "strain": "strain=DSM 43171", "accession": "GCA_900090245.1", "taxid": 47864, "species_taxid": 47864, "relation_to_type": "type", "validated": true, "ani": 78.8311, "matched_fragments": 716, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 78.8167, "matched_fragments": 703, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chaiyaphumensis", "strain": "strain=DSM 45246", "accession": "GCA_900091435.1", "taxid": 307119, "species_taxid": 307119, "relation_to_type": "type", "validated": true, "ani": 78.8113, "matched_fragments": 737, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 78.8096, "matched_fragments": 720, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 78.7117, "matched_fragments": 680, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 78.6478, "matched_fragments": 726, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora wenchangensis", "strain": "strain=CCTCC AA 2012002", "accession": "GCA_002210435.1", "taxid": 1185415, "species_taxid": 1185415, "relation_to_type": "type", "validated": true, "ani": 78.635, "matched_fragments": 733, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora polyrhachis", "strain": "strain=DSM 45886", "accession": 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