{
    "type": "genome",
    "identifier": "GCF_014648035.1",
    "organism": "Shewanella algicola",
    "title": "Shewanella algicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014648035.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245314",
        "wgs_master": "BMQI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "640633",
        "species_taxid": "640633",
        "organism_name": "Shewanella algicola",
        "infraspecific_name": "strain=JCM 31091",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464803v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014648035.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/648/035/GCF_014648035.1_ASM1464803v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4938240",
        "genome_size_ungapped": "4938240",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "175",
        "contig_count": "175",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014648035.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "4476",
        "protein_coding_gene_count": "4288",
        "non_coding_gene_count": "89",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shewanella algicola"
        ],
        "sample_taxid": [
            "640633"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.409 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4938240",
        "Number of Sequences": "175",
        "Longest Sequences (bp)": "244129",
        "N50 (bp)": "80156",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.3",
        "Number of CDSs": "4344",
        "Average Protein Length": "318.7",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shewanella algicola",
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                "accession": "GCA_014648035.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1559,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Shewanella saliphila",
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                "accession": "GCA_023283695.1",
                "taxid": 2282698,
                "species_taxid": 2282698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1245,
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                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Shewanella saliphila",
                "strain": "strain=JCM 32304",
                "accession": "GCA_014648295.1",
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                "species_taxid": 2282698,
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                "validated": true,
                "ani": 95.1181,
                "matched_fragments": 1296,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Shewanella litoralis",
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                "accession": "GCA_009828585.1",
                "taxid": 2282700,
                "species_taxid": 2282700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.7868,
                "matched_fragments": 1205,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella litoralis",
                "strain": "strain=JCM 32306",
                "accession": "GCA_014648335.1",
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                "species_taxid": 2282700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6435,
                "matched_fragments": 1210,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella inventionis",
                "strain": "strain=KCTC 42807",
                "accession": "GCA_023283595.1",
                "taxid": 1738770,
                "species_taxid": 1738770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9208,
                "matched_fragments": 1099,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella inventionis",
                "strain": "strain=CGMCC 1.15339",
                "accession": "GCA_014641855.1",
                "taxid": 1738770,
                "species_taxid": 1738770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8845,
                "matched_fragments": 1120,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella ulleungensis",
                "strain": "strain=KCTC 62130",
                "accession": "GCA_023283965.1",
                "taxid": 2282699,
                "species_taxid": 2282699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8561,
                "matched_fragments": 1158,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella ulleungensis",
                "strain": "strain=JCM 32305",
                "accession": "GCA_014648315.1",
                "taxid": 2282699,
                "species_taxid": 2282699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8446,
                "matched_fragments": 1169,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella basaltis",
                "strain": "strain=KCTC 22121",
                "accession": "GCA_023283885.1",
                "taxid": 472183,
                "species_taxid": 472183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9514,
                "matched_fragments": 1065,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella aestuarii",
                "strain": "strain=JCM 17801",
                "accession": "GCA_023283685.1",
                "taxid": 1028752,
                "species_taxid": 1028752,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4688,
                "matched_fragments": 487,
                "total_fragments": 1565,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014648035.1",
                "gtdb_species": "s__Shewanella algicola",
                "ani": 100.0,
                "matched_fragments": 1559,
                "total_fragments": 1565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.1181,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_014648295.1",
                "gtdb_species": "s__Shewanella saliphila",
                "ani": 95.129,
                "matched_fragments": 1295,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.1181,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_009828585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_014641855.1",
                "gtdb_species": "s__Shewanella inventionis",
                "ani": 84.8941,
                "matched_fragments": 1119,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014648315.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003797125.1",
                "gtdb_species": "s__Shewanella frigidimarina",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.227,
        "cell_length": 0.265,
        "doubling_h": 0.077,
        "growth_tmp": 22.402,
        "optimum_tmp": 22.248,
        "optimum_ph": 7.147,
        "genome_size": 4868941.65,
        "gc_content": 46.142,
        "coding_genes": 4161.776,
        "rRNA16S_genes": 9.437,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.333,
        "facultative_respiration": 0.565,
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        "aerobic_respiration": 0.413,
        "mesophilic_range_tmp": 0.812,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.187,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Shewanella",
        "algicola"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}