{ "type": "genome", "identifier": "GCF_014648095.1", "organism": "Deinococcus ruber", "title": "Deinococcus ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014648095.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245319", "wgs_master": "BMQL00000000.1", "refseq_category": "reference genome", "taxid": "1848197", "species_taxid": "1848197", "organism_name": "Deinococcus ruber", "infraspecific_name": "strain=JCM 31311", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464809v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014648095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/648/095/GCF_014648095.1_ASM1464809v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6082746", "genome_size_ungapped": "6082746", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "167", "contig_count": "167", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014648095.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5859", "protein_coding_gene_count": "5706", "non_coding_gene_count": "62", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus ruber" ], "sample_taxid": [ "1848197" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.699 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6082746", "Number of Sequences": "167", "Longest Sequences (bp)": "569512", "N50 (bp)": "99908", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.3", "Number of CDSs": "5698", "Average Protein Length": "298.7", "Coding Ratio (%)": "83.9", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus ruber", "strain": "strain=JCM 31311", "accession": "GCA_014648095.1", "taxid": 1848197, "species_taxid": 1848197, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiopugnans", "strain": "strain=DSM 12027", "accession": "GCA_014201625.1", "taxid": 57497, "species_taxid": 57497, "relation_to_type": "type", "validated": true, "ani": 78.0021, "matched_fragments": 467, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aerolatus", "strain": "strain=JCM 15442", "accession": "GCA_014647055.1", "taxid": 522487, "species_taxid": 522487, "relation_to_type": "type", "validated": true, "ani": 77.9658, "matched_fragments": 408, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aerophilus", "strain": "strain=JCM 15443", "accession": "GCA_014647075.1", "taxid": 522488, "species_taxid": 522488, "relation_to_type": "type", "validated": true, "ani": 77.7839, "matched_fragments": 393, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiodurans", "strain": "strain=ATCC 13939", "accession": "GCA_020546685.1", "taxid": 1299, "species_taxid": 1299, "relation_to_type": "type", "validated": true, "ani": 77.6308, "matched_fragments": 327, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiodurans", "strain": "strain=ATCC 13939", "accession": "GCA_000687895.1", "taxid": 1299, "species_taxid": 1299, "relation_to_type": "type", "validated": true, "ani": 77.6037, "matched_fragments": 324, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus multiflagellatus", "strain": "strain=KACC 19287", "accession": "GCA_020166415.1", "taxid": 1656887, "species_taxid": 1656887, "relation_to_type": "type", "validated": true, "ani": 77.5816, "matched_fragments": 379, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiodurans", 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1452751, "species_taxid": 1452751, "relation_to_type": "type", "validated": true, "ani": 77.4225, "matched_fragments": 392, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus saudiensis", "strain": "strain=CGMCC 1.15089", "accession": "GCA_014640655.1", "taxid": 1765963, "species_taxid": 1765963, "relation_to_type": "type", "validated": true, "ani": 77.3081, "matched_fragments": 346, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus soli (ex Cha et al. 2016)", "strain": "strain=N5", "accession": "GCA_001007995.1", "taxid": 1309411, "species_taxid": 1309411, "relation_to_type": "type", "validated": true, "ani": 77.2581, "matched_fragments": 329, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus maricopensis", "strain": "strain=DSM 21211", "accession": "GCA_000186385.1", "taxid": 309887, "species_taxid": 309887, 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