{ "type": "genome", "identifier": "GCF_014648275.1", "organism": "Pseudomonas laurentiana", "title": "Pseudomonas laurentiana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014648275.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245333", "wgs_master": "BMQU00000000.1", "refseq_category": "na", "taxid": "2364649", "species_taxid": "2364649", "organism_name": "Pseudomonas laurentiana", "infraspecific_name": "strain=JCM 32154", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464827v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014648275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/648/275/GCF_014648275.1_ASM1464827v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5217212", "genome_size_ungapped": "5216908", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "223", "contig_count": "223", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014648275.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "4816", "protein_coding_gene_count": "4684", "non_coding_gene_count": "64", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas laurentiana" ], "sample_taxid": [ "2364649" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.472 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5217212", "Number of Sequences": "223", "Longest Sequences (bp)": "425953", "N50 (bp)": "206160", "Gap Ratio (%)": "0.005827", "GCcontent (%)": "58.9", "Number of CDSs": "4766", "Average Protein Length": "318.0", "Coding Ratio (%)": "87.2", "Number of rRNAs": "6", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas laurentiana", "strain": "strain=JCM 32154", "accession": "GCA_014648275.1", "taxid": 2364649, "species_taxid": 2364649, 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"matched_fragments": 1050, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, "relation_to_type": "type", "validated": true, "ani": 83.1072, "matched_fragments": 865, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=NBRC 103040", "accession": "GCA_000730585.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 82.7926, "matched_fragments": 1019, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=DSM 22348", "accession": "GCA_900188455.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 82.774, "matched_fragments": 1013, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bharatica", "strain": "strain=CSV86", "accession": "GCA_000319305.2", "taxid": 2692112, "species_taxid": 2692112, "relation_to_type": "type", "validated": true, "ani": 82.4756, "matched_fragments": 984, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas arcuscaelestis", "strain": "strain=P66", "accession": "GCA_016881005.1", "taxid": 2710591, "species_taxid": 2710591, "relation_to_type": "type", "validated": true, "ani": 82.2277, "matched_fragments": 957, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 82.0383, "matched_fragments": 911, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 82.0244, "matched_fragments": 973, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas xantholysinigenes", "strain": "strain=RW9S1A", "accession": "GCA_014268885.2", "taxid": 2745490, "species_taxid": 2745490, "relation_to_type": "type", "validated": true, "ani": 82.0099, "matched_fragments": 943, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 81.8669, "matched_fragments": 900, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas eucalypticola", 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