{ "type": "genome", "identifier": "GCF_014648695.1", "organism": "Streptomyces albospinus", "title": "Streptomyces albospinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014648695.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245375", "wgs_master": "BMRP00000000.1", "refseq_category": "reference genome", "taxid": "285515", "species_taxid": "285515", "organism_name": "Streptomyces albospinus", "infraspecific_name": "strain=JCM 3399", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464869v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014648695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/648/695/GCF_014648695.1_ASM1464869v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9206985", "genome_size_ungapped": "9199946", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "165", "contig_count": "165", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014648695.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "8458", "protein_coding_gene_count": "7978", "non_coding_gene_count": "81", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces albospinus" ], "sample_taxid": [ "285515" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.490 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 15.62, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9206985", "Number of Sequences": "165", "Longest Sequences (bp)": "784127", "N50 (bp)": "201243", "Gap Ratio (%)": "0.076963", "GCcontent (%)": "70.9", "Number of CDSs": "8598", "Average Protein Length": "298.8", "Coding Ratio (%)": "83.7", "Number of rRNAs": "2", "Number of tRNAs": "114", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces albospinus", "strain": "strain=JCM 3399", "accession": "GCA_014648695.1", "taxid": 285515, "species_taxid": 285515, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2992, "total_fragments": 2998, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces albulus", "strain": "strain=JCM 4718", "accession": "GCA_014650635.1", "taxid": 68570, "species_taxid": 68570, "relation_to_type": "suspected-type", "validated": true, "ani": 87.8033, "matched_fragments": 2077, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NRRL B-2347", "accession": "GCA_002154415.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 86.7699, "matched_fragments": 1353, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NBRC 3934", "accession": "GCA_009176265.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 86.6141, "matched_fragments": 1761, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=JCM 4053", "accession": "GCA_019933235.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 86.6132, "matched_fragments": 1750, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicamycinicus", "strain": "strain=NBRC 110027", "accession": "GCA_000829715.2", "taxid": 1546107, "species_taxid": 1546107, "relation_to_type": "type", "validated": true, "ani": 86.5985, "matched_fragments": 1806, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sioyaensis", "strain": "strain=DSM 40032", "accession": "GCA_004122735.1", "taxid": 67364, "species_taxid": 67364, "relation_to_type": "type", "validated": true, "ani": 86.4871, "matched_fragments": 1654, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces platensis", "strain": "strain=DSM 40041", "accession": "GCA_002119195.1", "taxid": 58346, "species_taxid": 58346, "relation_to_type": "type", "validated": true, "ani": 86.4688, "matched_fragments": 1759, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces platensis", "strain": "strain=ATCC 23948", "accession": "GCA_008704855.1", "taxid": 58346, "species_taxid": 58346, "relation_to_type": "type", "validated": true, "ani": 86.4501, "matched_fragments": 1793, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces glebosus", "strain": "strain=NBRC 13786", "accession": "GCA_009811575.1", "taxid": 249580, "species_taxid": 249580, "relation_to_type": "type", "validated": true, "ani": 86.4151, "matched_fragments": 1821, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kronopolitis", "strain": "strain=CGMCC 4.7323", "accession": "GCA_014646275.1", "taxid": 1612435, "species_taxid": 1612435, "relation_to_type": "type", "validated": true, "ani": 86.3482, "matched_fragments": 1687, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tubercidicus", "strain": "strain=NBRC 13090", "accession": "GCA_009811635.1", "taxid": 47759, "species_taxid": 47759, "relation_to_type": "type", "validated": true, "ani": 86.2422, "matched_fragments": 1735, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kasugaensis", "strain": "strain=BCRC 12349", "accession": "GCA_002261115.1", "taxid": 1946, "species_taxid": 1946, "relation_to_type": "type", "validated": true, "ani": 85.8001, "matched_fragments": 1717, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pinistramenti", "strain": "strain=SF28", "accession": "GCA_020564935.1", "taxid": 2884812, "species_taxid": 2884812, "relation_to_type": "type", "validated": true, "ani": 85.1339, "matched_fragments": 1589, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces benahoarensis", "strain": "strain=MZ03-37", "accession": "GCA_007280575.1", "taxid": 2595054, "species_taxid": 2595054, "relation_to_type": "type", "validated": true, "ani": 84.3779, "matched_fragments": 1244, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 83.7288, "matched_fragments": 1610, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_000715845.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 83.6327, "matched_fragments": 1551, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces chrestomyceticus", "strain": "strain=NBRC 13444", "accession": "GCA_003865135.1", "taxid": 68185, "species_taxid": 68185, "relation_to_type": "type", "validated": true, "ani": 83.5818, "matched_fragments": 1603, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces paromomycinus", "strain": "strain=NBRC 15454", "accession": "GCA_003865155.1", "taxid": 92743, "species_taxid": 92743, "relation_to_type": "type", "validated": true, "ani": 83.5635, "matched_fragments": 1616, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 83.5494, "matched_fragments": 1590, "total_fragments": 2998, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 15.62, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCF_014648695.1", "gtdb_species": "s__Streptomyces albospinus", "ani": 100.0, "matched_fragments": 2992, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009834125.1", "gtdb_species": "s__Streptomyces sp009834125", "ani": 93.3908, "matched_fragments": 2358, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000805335.1", "gtdb_species": "s__Streptomyces sp000805335", "ani": 92.9806, "matched_fragments": 2080, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002803155.1", "gtdb_species": "s__Streptomyces sp002803155", "ani": 88.1386, "matched_fragments": 2095, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001704275.1", "gtdb_species": "s__Streptomyces noursei", "ani": 87.9898, "matched_fragments": 2061, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.5028, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016917755.1", "gtdb_species": "s__Streptomyces yunnanensis", "ani": 87.8834, "matched_fragments": 2096, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.5028, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "97.21", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000373585.1", "gtdb_species": "s__Streptomyces sp000373585", "ani": 87.634, "matched_fragments": 1948, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009176265.1", "gtdb_species": "s__Streptomyces angustmyceticus", "ani": 86.6076, "matched_fragments": 1761, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009811635.1", "gtdb_species": "s__Streptomyces tubercidicus", "ani": 86.2087, "matched_fragments": 1742, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002082195.1", "gtdb_species": "s__Streptomyces gilvosporeus", "ani": 86.0211, "matched_fragments": 1862, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0251, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000720995.1", "gtdb_species": "s__Streptomyces celluloflavus", "ani": 85.9279, "matched_fragments": 1675, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000935125.1", "gtdb_species": "s__Streptomyces natalensis", "ani": 85.8927, "matched_fragments": 1854, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0251, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003865135.1", "gtdb_species": "s__Streptomyces chrestomyceticus", "ani": 83.5799, "matched_fragments": 1603, "total_fragments": 2998, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "albospinus" ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }