{ "type": "genome", "identifier": "GCF_014648835.1", "organism": "Streptomyces netropsis", "title": "Streptomyces netropsis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014648835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245383", "wgs_master": "BMRW00000000.1", "refseq_category": "na", "taxid": "55404", "species_taxid": "55404", "organism_name": "Streptomyces netropsis", "infraspecific_name": "strain=JCM 4063", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464883v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014648835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/648/835/GCF_014648835.1_ASM1464883v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7728815", "genome_size_ungapped": "7722815", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014648835.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6765", "protein_coding_gene_count": "6562", "non_coding_gene_count": "76", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces netropsis" ], "sample_taxid": [ "55404" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.076 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7728815", "Number of Sequences": "48", "Longest Sequences (bp)": "1017708", "N50 (bp)": "519018", "Gap Ratio (%)": "0.077955", "GCcontent (%)": "71.6", "Number of CDSs": "6804", "Average Protein Length": "330.2", "Coding Ratio (%)": "87.2", "Number of rRNAs": "0", "Number of tRNAs": "91", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces netropsis", "strain": "strain=JCM 4063", "accession": "GCA_014648835.1", "taxid": 55404, "species_taxid": 55404, 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"below_threshold" }, { "organism_name": "Streptomyces roseifaciens", "strain": "strain=MBT76", "accession": "GCA_001445655.1", "taxid": 1488406, "species_taxid": 1488406, "relation_to_type": "type", "validated": true, "ani": 85.3283, "matched_fragments": 1688, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hiroshimensis", "strain": "strain=JCM 4586", "accession": "GCA_014650335.1", "taxid": 66424, "species_taxid": 66424, "relation_to_type": "type", "validated": true, "ani": 85.3098, "matched_fragments": 1632, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 82.0817, "matched_fragments": 1341, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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