{ "type": "genome", "identifier": "GCF_014649255.1", "organism": "Streptomyces thermoviolaceus subsp. apingens", "title": "Streptomyces thermoviolaceus subsp. apingens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014649255.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245412", "wgs_master": "BMSR00000000.1", "refseq_category": "na", "taxid": "66859", "species_taxid": "1952", "organism_name": "Streptomyces thermoviolaceus subsp. apingens", "infraspecific_name": "strain=JCM 4312", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464925v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014649255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/649/255/GCF_014649255.1_ASM1464925v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5993961", "genome_size_ungapped": "5993662", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014649255.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5282", "protein_coding_gene_count": "5054", "non_coding_gene_count": "78", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces thermoviolaceus subsp. apingens" ], "sample_taxid": [ "66859" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.598 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5993961", "Number of Sequences": "57", "Longest Sequences (bp)": "620963", "N50 (bp)": "259347", "Gap Ratio (%)": "0.004988", "GCcontent (%)": "72.6", "Number of CDSs": "5289", "Average Protein Length": "320.5", "Coding Ratio (%)": "84.8", "Number of rRNAs": "1", "Number of tRNAs": "88", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces thermoviolaceus subsp. apingens", "strain": "strain=JCM 4312", "accession": 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