{ "type": "genome", "identifier": "GCF_014649495.1", "organism": "Streptomyces filipinensis", "title": "Streptomyces filipinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014649495.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245426", "wgs_master": "BMTD00000000.1", "refseq_category": "reference genome", "taxid": "66887", "species_taxid": "66887", "organism_name": "Streptomyces filipinensis", "infraspecific_name": "strain=JCM 4369", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464949v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014649495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/649/495/GCF_014649495.1_ASM1464949v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9249383", "genome_size_ungapped": "9248729", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "101", "contig_count": "101", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014649495.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "8423", "protein_coding_gene_count": "8086", "non_coding_gene_count": "82", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces filipinensis" ], "sample_taxid": [ "66887" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.480 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9249383", "Number of Sequences": "101", "Longest Sequences (bp)": "1120761", "N50 (bp)": "364515", "Gap Ratio (%)": "0.007071", "GCcontent (%)": "71.8", "Number of CDSs": "8454", "Average Protein Length": "318.2", "Coding Ratio (%)": "87.2", "Number of rRNAs": "2", "Number of tRNAs": "84", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces filipinensis", "strain": "strain=JCM 4369", "accession": "GCA_014649495.1", "taxid": 66887, "species_taxid": 66887, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3034, "total_fragments": 3037, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces durhamensis", "strain": "strain=NRRL B-3309", "accession": "GCA_000725475.1", "taxid": 68194, "species_taxid": 68194, "relation_to_type": "type", "validated": true, "ani": 96.7318, "matched_fragments": 2691, "total_fragments": 3037, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces fodineus", "strain": "strain=TW1S1", "accession": "GCA_001735805.1", "taxid": 1904616, "species_taxid": 1904616, "relation_to_type": "type", "validated": true, "ani": 90.2353, "matched_fragments": 2235, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces puniciscabiei", "strain": "strain=DSM 41929", "accession": "GCA_006715785.1", "taxid": 164348, "species_taxid": 164348, "relation_to_type": "type", "validated": true, "ani": 90.1335, "matched_fragments": 2194, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 90.1128, "matched_fragments": 2164, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces broussonetiae", "strain": "strain=T44", "accession": "GCA_009796285.1", "taxid": 2686304, "species_taxid": 2686304, "relation_to_type": "type", "validated": true, "ani": 88.5385, "matched_fragments": 2117, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monashensis", "strain": "strain=MUSC 1", "accession": "GCA_001866665.1", "taxid": 1678012, "species_taxid": 1678012, "relation_to_type": "type", "validated": true, "ani": 88.4279, "matched_fragments": 2076, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces echinatus", "strain": "strain=CECT 3313", "accession": "GCA_014203595.1", "taxid": 67293, "species_taxid": 67293, "relation_to_type": "type", "validated": true, "ani": 88.1697, "matched_fragments": 2094, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces echinatus", "strain": "strain=JCM4574", "accession": "GCA_020400685.1", "taxid": 67293, "species_taxid": 67293, "relation_to_type": "type", "validated": true, "ani": 88.1503, "matched_fragments": 2061, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces corchorusii", "strain": "strain=DSM 40340", "accession": "GCA_001514055.1", "taxid": 1903, "species_taxid": 1903, "relation_to_type": "type", "validated": true, "ani": 88.0936, "matched_fragments": 1984, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces canarius", "strain": "strain=JCM 4733", "accession": "GCA_014650735.1", "taxid": 285453, "species_taxid": 285453, "relation_to_type": "type", "validated": true, "ani": 87.9211, "matched_fragments": 2013, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cellostaticus", "strain": "strain=DSM 40189", "accession": "GCA_001513965.1", "taxid": 67285, "species_taxid": 67285, "relation_to_type": "type", "validated": true, "ani": 87.9116, "matched_fragments": 2094, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 87.8824, "matched_fragments": 1949, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseochromogenes", "strain": "strain=ATCC 14511", "accession": "GCA_001542625.2", "taxid": 68214, "species_taxid": 68214, "relation_to_type": "type", "validated": true, "ani": 87.6243, "matched_fragments": 2165, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseochromogenes", "strain": "strain=DSM 40499", "accession": "GCA_017874495.1", "taxid": 68214, "species_taxid": 68214, "relation_to_type": "type", "validated": true, "ani": 87.5768, "matched_fragments": 2169, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis subsp. oryzicola", "strain": "strain=W18L9", "accession": "GCA_013870495.1", "taxid": 2749088, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 85.1812, "matched_fragments": 1412, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis", "strain": "strain=DSM 42034", "accession": "GCA_021462265.1", "taxid": 943815, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 85.007, "matched_fragments": 1908, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 84.4328, "matched_fragments": 1423, "total_fragments": 3037, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014649495.1", "gtdb_species": "s__Streptomyces filipinensis", "ani": 100.0, "matched_fragments": 3034, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.80", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001735805.1", "gtdb_species": "s__Streptomyces fodineus", "ani": 90.2353, "matched_fragments": 2235, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006715785.1", "gtdb_species": "s__Streptomyces puniciscabiei", "ani": 90.1602, "matched_fragments": 2190, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "95.42", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009604455.1", "gtdb_species": "s__Streptomyces sp009604455", "ani": 90.0876, "matched_fragments": 2158, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000497445.1", "gtdb_species": "s__Streptomyces roseochromogenus", "ani": 89.8421, "matched_fragments": 2143, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001953885.1", "gtdb_species": "s__Streptomyces sp001953885", "ani": 89.7217, "matched_fragments": 2186, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014650595.1", "gtdb_species": "s__Streptomyces alanosinicus", "ani": 89.4024, "matched_fragments": 2117, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280015.1", "gtdb_species": "s__Streptomyces sp001280015", "ani": 88.8985, "matched_fragments": 2040, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009796285.1", "gtdb_species": "s__Streptomyces broussonetiae", "ani": 88.5613, "matched_fragments": 2113, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001866665.1", "gtdb_species": "s__Streptomyces monashensis", "ani": 88.4182, "matched_fragments": 2077, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.09", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016741855.1", "gtdb_species": "s__Streptomyces musisoli", "ani": 88.159, "matched_fragments": 2094, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203595.1", "gtdb_species": "s__Streptomyces echinatus", "ani": 88.1321, "matched_fragments": 2100, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014650115.1", "gtdb_species": "s__Streptomyces olivaceoviridis", "ani": 88.1143, "matched_fragments": 1991, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.78", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000716535.1", "gtdb_species": "s__Streptomyces flaveolus_A", "ani": 88.0409, "matched_fragments": 2029, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_002155905.1", "gtdb_species": "s__Streptomyces tricolor", "ani": 88.0284, "matched_fragments": 1630, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.72", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001513965.1", "gtdb_species": "s__Streptomyces cellostaticus", "ani": 87.9297, "matched_fragments": 2091, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014650035.1", "gtdb_species": "s__Streptomyces lucensis", "ani": 87.8958, "matched_fragments": 1890, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016741775.1", "gtdb_species": "s__Streptomyces actinomycinicus", "ani": 87.8371, "matched_fragments": 2057, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001542625.1", "gtdb_species": "s__Streptomyces griseochromogenes", "ani": 87.6386, "matched_fragments": 2163, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016432725.1", "gtdb_species": "s__Streptomyces sp016432725", "ani": 86.9966, "matched_fragments": 1888, "total_fragments": 3037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 28.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "filipinensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }