{
    "type": "genome",
    "identifier": "GCF_014649595.1",
    "organism": "Streptomyces griseomycini",
    "title": "Streptomyces griseomycini",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014649595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245432",
        "wgs_master": "BMTI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "66895",
        "species_taxid": "66895",
        "organism_name": "Streptomyces griseomycini",
        "infraspecific_name": "strain=JCM 4382",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464959v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014649595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/649/595/GCF_014649595.1_ASM1464959v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8292334",
        "genome_size_ungapped": "8292334",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "132",
        "contig_count": "132",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014649595.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "7501",
        "protein_coding_gene_count": "7069",
        "non_coding_gene_count": "77",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces griseomycini"
        ],
        "sample_taxid": [
            "66895"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "2.206 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8292334",
        "Number of Sequences": "132",
        "Longest Sequences (bp)": "1170215",
        "N50 (bp)": "348767",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.9",
        "Number of CDSs": "7470",
        "Average Protein Length": "314.2",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces griseostramineus",
                "strain": "strain=CECT 3273",
                "accession": "GCA_014203535.1",
                "taxid": 66898,
                "species_taxid": 66898,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.762,
                "matched_fragments": 2643,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces griseostramineus",
                "strain": "strain=JCM 4385",
                "accession": "GCA_014649635.1",
                "taxid": 66898,
                "species_taxid": 66898,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.7618,
                "matched_fragments": 2615,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces viridosporus",
                "strain": "strain=NRRL 2414",
                "accession": "GCA_002078235.1",
                "taxid": 67581,
                "species_taxid": 67581,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8298,
                "matched_fragments": 1604,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces capillispiralis",
                "strain": "strain=DSM 41695",
                "accession": "GCA_007829875.1",
                "taxid": 68182,
                "species_taxid": 68182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7687,
                "matched_fragments": 1937,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces capillispiralis",
                "strain": "strain=JCM 5075",
                "accession": "GCA_014656315.1",
                "taxid": 68182,
                "species_taxid": 68182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7156,
                "matched_fragments": 1928,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces calvus",
                "strain": "strain=JCM 4326",
                "accession": "GCA_014649315.1",
                "taxid": 67282,
                "species_taxid": 67282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3643,
                "matched_fragments": 1934,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces calvus",
                "strain": "strain=CECT 3271",
                "accession": "GCA_014138735.1",
                "taxid": 67282,
                "species_taxid": 67282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2627,
                "matched_fragments": 1940,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces malachitofuscus",
                "strain": "strain=JCM 4493",
                "accession": "GCA_014650055.1",
                "taxid": 67322,
                "species_taxid": 67322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2175,
                "matched_fragments": 1895,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseoflavus",
                "strain": "strain=JCM 4479",
                "accession": "GCA_014649995.1",
                "taxid": 35619,
                "species_taxid": 35619,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.7321,
                "matched_fragments": 1856,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lomondensis",
                "strain": "strain=DSM 41428",
                "accession": "GCA_021440105.1",
                "taxid": 68229,
                "species_taxid": 68229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8696,
                "matched_fragments": 1813,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces viridiviolaceus",
                "strain": "strain=JCM 4855",
                "accession": "GCA_014650995.1",
                "taxid": 68282,
                "species_taxid": 68282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8322,
                "matched_fragments": 1815,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseicoloratus",
                "strain": "strain=TRM S81-3",
                "accession": "GCA_014534645.1",
                "taxid": 2752516,
                "species_taxid": 2752516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7886,
                "matched_fragments": 1844,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces purpurascens",
                "strain": "strain=DSM 40310",
                "accession": "GCA_021390235.1",
                "taxid": 1924,
                "species_taxid": 1924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4657,
                "matched_fragments": 1808,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces harenosi",
                "strain": "strain=PRKS01-65",
                "accession": "GCA_011008945.1",
                "taxid": 2697029,
                "species_taxid": 2697029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1511,
                "matched_fragments": 1526,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces blattellae",
                "strain": "strain=TRM63209",
                "accession": "GCA_009709555.1",
                "taxid": 2569855,
                "species_taxid": 2569855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1161,
                "matched_fragments": 1547,
                "total_fragments": 2708,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014203535.1",
                "gtdb_species": "s__Streptomyces griseostramineus",
                "ani": 99.762,
                "matched_fragments": 2643,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.76",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009852415.1",
                "gtdb_species": "s__Streptomyces sp009852415",
                "ani": 92.6763,
                "matched_fragments": 2110,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008704515.1",
                "gtdb_species": "s__Streptomyces viridosporus",
                "ani": 92.1693,
                "matched_fragments": 1828,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_019049255.1",
                "gtdb_species": "s__Streptomyces sp019049255",
                "ani": 90.0141,
                "matched_fragments": 2044,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001905725.1",
                "gtdb_species": "s__Streptomyces sp001905725",
                "ani": 89.9901,
                "matched_fragments": 2017,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007829875.1",
                "gtdb_species": "s__Streptomyces capillispiralis",
                "ani": 89.7922,
                "matched_fragments": 1934,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001279005.1",
                "gtdb_species": "s__Streptomyces caelestis_A",
                "ani": 89.76,
                "matched_fragments": 1866,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_006782915.1",
                "gtdb_species": "s__Streptomyces calvus",
                "ani": 89.2446,
                "matched_fragments": 1938,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000725125.1",
                "gtdb_species": "s__Streptomyces toyocaensis",
                "ani": 89.2085,
                "matched_fragments": 1771,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014534645.1",
                "gtdb_species": "s__Streptomyces sp014534645",
                "ani": 86.792,
                "matched_fragments": 1844,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650995.1",
                "gtdb_species": "s__Streptomyces viridiviolaceus",
                "ani": 86.7527,
                "matched_fragments": 1826,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000696115.1",
                "gtdb_species": "s__Streptomyces olindensis",
                "ani": 86.6737,
                "matched_fragments": 1840,
                "total_fragments": 2708,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 26.5,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 1.0,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "griseomycini"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}