{ "type": "genome", "identifier": "GCF_014649815.1", "organism": "Streptomyces mutabilis", "title": "Streptomyces mutabilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014649815.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245443", "wgs_master": "BMTT00000000.1", "refseq_category": "na", "taxid": "67332", "species_taxid": "67332", "organism_name": "Streptomyces mutabilis", "infraspecific_name": "strain=JCM 4400", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464981v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014649815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/649/815/GCF_014649815.1_ASM1464981v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7759821", "genome_size_ungapped": "7759546", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "359", "contig_count": "359", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014649815.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "7100", "protein_coding_gene_count": "6679", "non_coding_gene_count": "81", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces mutabilis" ], "sample_taxid": [ "67332" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.091 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7759821", "Number of Sequences": "359", "Longest Sequences (bp)": "950325", "N50 (bp)": "306986", "Gap Ratio (%)": "0.003544", "GCcontent (%)": "70.7", "Number of CDSs": "7048", "Average Protein Length": "312.9", "Coding Ratio (%)": "85.3", "Number of rRNAs": "8", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces mutabilis", "strain": "strain=JCM 4400", "accession": "GCA_014649815.1", "taxid": 67332, "species_taxid": 67332, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2481, "total_fragments": 2482, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces ambofaciens", "strain": "strain=ATCC 23877", "accession": "GCA_001267885.1", "taxid": 1889, "species_taxid": 1889, "relation_to_type": "type", "validated": true, "ani": 90.0331, "matched_fragments": 1929, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hyderabadensis", "strain": "strain=JCM 17657", "accession": "GCA_020404845.1", "taxid": 598549, "species_taxid": 598549, "relation_to_type": "type", "validated": true, "ani": 89.6855, "matched_fragments": 1831, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrogriseus", "strain": "strain=NBRC 15455", "accession": "GCA_003112595.1", "taxid": 194673, "species_taxid": 194673, "relation_to_type": "type", "validated": true, "ani": 89.4892, "matched_fragments": 1881, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces anthocyanicus", "strain": "strain=JCM 5058", "accession": "GCA_014651155.1", "taxid": 68174, "species_taxid": 68174, "relation_to_type": "type", "validated": true, "ani": 89.4234, "matched_fragments": 1879, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces solaniscabiei", "strain": "strain=FS70", "accession": "GCA_020312315.1", "taxid": 2683255, "species_taxid": 2683255, "relation_to_type": "type", "validated": true, "ani": 89.2805, "matched_fragments": 1786, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces flaveolus", "strain": "strain=JCM 4032", "accession": "GCA_014648815.1", "taxid": 67297, "species_taxid": 67297, "relation_to_type": "type", "validated": true, "ani": 89.1798, "matched_fragments": 1822, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces ardesiacus", "strain": "strain=NBRC 15402", "accession": "GCA_003112575.1", "taxid": 285564, "species_taxid": 285564, "relation_to_type": "type", "validated": true, "ani": 89.1609, "matched_fragments": 1822, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvulus", "strain": "strain=JCM 4068", "accession": "GCA_014648855.1", "taxid": 146923, "species_taxid": 146923, "relation_to_type": "type", "validated": true, "ani": 89.0188, "matched_fragments": 1822, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces olivaceus", "strain": "strain=NRRL B-3009", "accession": "GCA_000721235.1", "taxid": 47716, "species_taxid": 47716, "relation_to_type": "type", "validated": true, "ani": 88.7032, "matched_fragments": 1801, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseicoloratus", "strain": "strain=TRM S81-3", "accession": "GCA_014534645.1", "taxid": 2752516, "species_taxid": 2752516, "relation_to_type": "type", "validated": true, "ani": 88.3573, "matched_fragments": 1794, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 86.3339, "matched_fragments": 1491, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces capillispiralis", "strain": "strain=JCM 5075", "accession": "GCA_014656315.1", "taxid": 68182, "species_taxid": 68182, "relation_to_type": "type", "validated": true, "ani": 85.8562, "matched_fragments": 1749, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cahuitamycinicus", "strain": "strain=13K301", "accession": "GCA_002891435.1", "taxid": 2070367, "species_taxid": 2070367, "relation_to_type": "type", "validated": true, "ani": 85.2877, "matched_fragments": 1454, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 84.867, "matched_fragments": 1470, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 84.6573, "matched_fragments": 1513, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014649815.1", "gtdb_species": "s__Streptomyces mutabilis", "ani": 100.0, "matched_fragments": 2481, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.69", "min_intra_species_ani": "95.91", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.76", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_001905385.1", "gtdb_species": "s__Streptomyces sp001905385", "ani": 92.7659, "matched_fragments": 1968, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.01", "min_intra_species_ani": "96.01", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002155895.1", "gtdb_species": "s__Streptomyces rochei", "ani": 91.9981, "matched_fragments": 1678, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.79", "num_clustered_genomes": 28, "status": "-" }, { "accession": "GCF_002005225.1", "gtdb_species": "s__Streptomyces pactum_A", "ani": 90.5015, "matched_fragments": 1961, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001267885.1", "gtdb_species": "s__Streptomyces ambofaciens", "ani": 89.9982, "matched_fragments": 1935, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000772045.1", "gtdb_species": "s__Streptomyces sp000772045", "ani": 89.654, "matched_fragments": 1861, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.88", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_003112595.1", "gtdb_species": "s__Streptomyces rubrogriseus", "ani": 89.5051, "matched_fragments": 1879, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.9168, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000717995.1", "gtdb_species": "s__Streptomyces violaceorubidus", "ani": 89.5039, "matched_fragments": 1816, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003112555.1", "gtdb_species": "s__Streptomyces coelicoflavus", "ani": 89.4043, "matched_fragments": 1876, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "97.03", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_014648815.1", "gtdb_species": "s__Streptomyces flaveolus", "ani": 89.2261, "matched_fragments": 1816, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003112575.1", "gtdb_species": "s__Streptomyces ardesiacus", "ani": 89.1462, "matched_fragments": 1823, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "95.84", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.82", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_002005565.1", "gtdb_species": "s__Streptomyces sp002005565", "ani": 89.0847, "matched_fragments": 1698, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018614415.1", "gtdb_species": "s__Streptomyces sp018614415", "ani": 86.758, "matched_fragments": 1657, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "mutabilis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }