{ "type": "genome", "identifier": "GCF_014651235.1", "organism": "Leuconostoc lactis KCTC 3528 = DSM 20202", "title": "Leuconostoc lactis KCTC 3528 = DSM 20202", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651235.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245554", "wgs_master": "BMWM00000000.1", "refseq_category": "na", "taxid": "935294", "species_taxid": "1246", "organism_name": "Leuconostoc lactis KCTC 3528 = DSM 20202", "infraspecific_name": "strain=JCM 6123", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1465123v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/235/GCF_014651235.1_ASM1465123v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1648881", "genome_size_ungapped": "1648881", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651235.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "1681", "protein_coding_gene_count": "1585", "non_coding_gene_count": "51", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Leuconostoc lactis KCTC 3528 = DSM 20202" ], "sample_taxid": [ "935294" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.471 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1648881", "Number of Sequences": "58", "Longest Sequences (bp)": "242211", "N50 (bp)": "57641", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "1631", "Average Protein Length": "299.6", "Coding Ratio (%)": "88.9", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leuconostoc lactis", "strain": "strain=JCM 6123", "accession": "GCA_014651235.1", "taxid": 1246, "species_taxid": 1246, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 516, "total_fragments": 519, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc lactis", "strain": "strain=JCM 6123", "accession": "GCA_019656035.1", "taxid": 1246, "species_taxid": 1246, "relation_to_type": "type", "validated": true, "ani": 99.9948, "matched_fragments": 504, "total_fragments": 519, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc holzapfelii", "strain": "strain=CCUG 54536", "accession": "GCA_012396485.1", "taxid": 434464, "species_taxid": 434464, "relation_to_type": "type", "validated": true, "ani": 82.9772, "matched_fragments": 346, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc holzapfelii", "strain": "strain=JCM 16942", "accession": "GCA_019655995.1", "taxid": 434464, "species_taxid": 434464, "relation_to_type": "type", "validated": true, "ani": 82.896, "matched_fragments": 350, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc kimchii", "strain": "strain=IMSNU 11154", "accession": "GCA_000092505.1", "taxid": 136609, "species_taxid": 136609, "relation_to_type": "type", "validated": true, "ani": 80.4992, "matched_fragments": 187, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc citreum", "strain": "strain=ATCC 49370", "accession": "GCA_004354555.1", "taxid": 33964, "species_taxid": 33964, "relation_to_type": "type", "validated": true, "ani": 80.1084, "matched_fragments": 176, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc inhae", "strain": "strain=DSM 15101", "accession": "GCA_019656015.1", "taxid": 178001, "species_taxid": 178001, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1994, "matched_fragments": 183, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Convivina intestini", "strain": "strain=DSM 28795", "accession": "GCA_003096575.1", "taxid": 1505726, "species_taxid": 1505726, "relation_to_type": "type", "validated": true, "ani": 78.3501, "matched_fragments": 64, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014651235.1", "gtdb_species": "s__Leuconostoc lactis", "ani": 100.0, "matched_fragments": 516, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.49", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 22, "status": "conclusive" }, { "accession": "GCF_007954625.1", "gtdb_species": "s__Leuconostoc lactis_A", "ani": 94.6879, "matched_fragments": 478, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "96.88", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_900554745.1", "gtdb_species": "s__Leuconostoc sp900554745", "ani": 87.7189, "matched_fragments": 279, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012396485.1", "gtdb_species": "s__Leuconostoc holzapfelii", "ani": 82.9832, "matched_fragments": 345, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000092505.1", "gtdb_species": "s__Leuconostoc kimchii", "ani": 80.5134, "matched_fragments": 186, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.53", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009676745.1", "gtdb_species": "s__Leuconostoc mesenteroides_B", "ani": 80.3608, "matched_fragments": 129, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004354555.1", "gtdb_species": "s__Leuconostoc citreum", "ani": 80.1157, "matched_fragments": 175, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_014207505.1", "gtdb_species": "s__Leuconostoc carnosum", "ani": 79.7396, "matched_fragments": 162, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_003096575.1", "gtdb_species": "s__Convivina intestini", "ani": 78.3501, "matched_fragments": 64, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Convivina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.149, "cell_length": 0.058, "doubling_h": null, "growth_tmp": 29.5, "optimum_tmp": 21.5, "optimum_ph": 5.899, "genome_size": 1775117.0, "gc_content": 43.321, "coding_genes": 1645.0, "rRNA16S_genes": 4.0, "tRNA_genes": 67.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Leuconostoc", "lactis", "KCTC", "3528", "=", "DSM", "20202" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }