{
    "type": "genome",
    "identifier": "GCF_014651435.1",
    "organism": "Pseudoduganella plicata",
    "title": "Pseudoduganella plicata",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014651435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245564",
        "wgs_master": "BMWW00000000.1",
        "refseq_category": "na",
        "taxid": "321984",
        "species_taxid": "321984",
        "organism_name": "Pseudoduganella plicata",
        "infraspecific_name": "strain=KCTC 12344",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1465143v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014651435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/435/GCF_014651435.1_ASM1465143v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5845241",
        "genome_size_ungapped": "5844498",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "37",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014651435.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "5218",
        "protein_coding_gene_count": "5086",
        "non_coding_gene_count": "79",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudoduganella plicata"
        ],
        "sample_taxid": [
            "321984"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.607 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5845241",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "1250927",
        "N50 (bp)": "578011",
        "Gap Ratio (%)": "0.012711",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "5125",
        "Average Protein Length": "340.8",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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            },
            {
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            {
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_007830495.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella lurida",
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            {
                "organism_name": "Pseudoduganella dura",
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            {
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                "organism_name": "Massilia cavernae",
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                "status": "below_threshold"
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            {
                "organism_name": "Massilia oculi",
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            {
                "organism_name": "Massilia solisilvae",
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        ],
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}