{ "type": "genome", "identifier": "GCF_014651535.1", "organism": "Salinimicrobium marinum", "title": "Salinimicrobium marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651535.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245570", "wgs_master": "BMXB00000000.1", "refseq_category": "reference genome", "taxid": "680283", "species_taxid": "680283", "organism_name": "Salinimicrobium marinum", "infraspecific_name": "strain=KCTC 12719", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465153v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/535/GCF_014651535.1_ASM1465153v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4198878", "genome_size_ungapped": "4198878", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651535.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3701", "protein_coding_gene_count": "3618", "non_coding_gene_count": "48", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinimicrobium marinum" ], "sample_taxid": [ "680283" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4198878", "Number of Sequences": "57", "Longest Sequences (bp)": "952614", "N50 (bp)": "187046", "Gap Ratio (%)": "0.000071", "GCcontent (%)": "39.9", "Number of CDSs": "3566", "Average Protein Length": "340.8", "Coding Ratio (%)": "86.8", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinimicrobium marinum", "strain": "strain=KCTC 12719", "accession": "GCA_014651535.1", "taxid": 680283, "species_taxid": 680283, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1368, "total_fragments": 1371, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinimicrobium oceani", "strain": "strain=J15B91", "accession": "GCA_012037645.1", "taxid": 2722702, "species_taxid": 2722702, "relation_to_type": "type", "validated": true, "ani": 78.5014, "matched_fragments": 254, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimicrobium catena", "strain": "strain=CGMCC 1.6101", "accession": "GCA_900102915.1", "taxid": 390640, "species_taxid": 390640, "relation_to_type": "type", "validated": true, "ani": 77.9532, "matched_fragments": 252, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimicrobium catena", "strain": "strain=DSM 23553", "accession": "GCA_900107495.1", "taxid": 390640, "species_taxid": 390640, "relation_to_type": "type", "validated": true, "ani": 77.9327, "matched_fragments": 257, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimicrobium sediminis", "strain": "strain=CGMCC 1.12641", "accession": "GCA_900215295.1", "taxid": 1343891, "species_taxid": 1343891, "relation_to_type": "type", "validated": true, "ani": 77.6441, "matched_fragments": 290, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimicrobium xinjiangense", "strain": "strain=DSM 19287", "accession": "GCA_000423585.1", "taxid": 438596, "species_taxid": 438596, "relation_to_type": "type", "validated": true, "ani": 77.6395, "matched_fragments": 286, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimicrobium terrae", "strain": "strain=DSM 17865", "accession": "GCA_000424665.1", "taxid": 470866, "species_taxid": 470866, "relation_to_type": "type", "validated": true, "ani": 77.5173, "matched_fragments": 295, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella fulva", "strain": "strain=SH35", "accession": "GCA_003024155.1", "taxid": 2126553, "species_taxid": 2126553, "relation_to_type": "type", "validated": true, "ani": 77.2487, "matched_fragments": 175, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter agarivorans", "strain": "strain=DSM 23515", "accession": "GCA_900113135.1", "taxid": 345907, "species_taxid": 345907, "relation_to_type": "type", "validated": true, "ani": 77.202, "matched_fragments": 221, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter tibetensis", "strain": "strain=JZCK2", "accession": "GCA_020164485.1", "taxid": 2873600, "species_taxid": 2873600, "relation_to_type": "type", "validated": true, "ani": 77.1828, "matched_fragments": 200, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter maritimus", "strain": "strain=F63223", "accession": "GCA_016236915.1", "taxid": 2794347, "species_taxid": 2794347, "relation_to_type": "type", "validated": true, "ani": 76.9929, "matched_fragments": 160, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella gaetbulicola", "strain": "strain=DSM 23082", "accession": "GCA_003054225.1", "taxid": 703340, "species_taxid": 703340, "relation_to_type": "type", "validated": true, "ani": 76.7803, "matched_fragments": 153, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 76.2467, "matched_fragments": 62, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gillisiae", "strain": "strain=DSM 22376", "accession": "GCA_900107635.1", "taxid": 150146, "species_taxid": 150146, "relation_to_type": "type", "validated": true, "ani": 75.4717, "matched_fragments": 54, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014651535.1", "gtdb_species": "s__Salinimicrobium marinum", "ani": 100.0, "matched_fragments": 1368, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_012038135.1", "gtdb_species": "s__Salinimicrobium sp012038135", "ani": 78.0913, "matched_fragments": 287, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102915.1", "gtdb_species": "s__Salinimicrobium catena", "ani": 77.9577, "matched_fragments": 251, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007993795.1", "gtdb_species": "s__Gillisia arcticum", "ani": 77.8927, "matched_fragments": 190, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423585.1", "gtdb_species": "s__Salinimicrobium xinjiangense", "ani": 77.6453, "matched_fragments": 287, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900215295.1", "gtdb_species": "s__Salinimicrobium sediminis", "ani": 77.6218, "matched_fragments": 290, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000424665.1", "gtdb_species": "s__Salinimicrobium terrae", "ani": 77.5284, "matched_fragments": 294, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003024155.1", "gtdb_species": "s__Gramella fulva", "ani": 77.2487, "matched_fragments": 175, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113135.1", "gtdb_species": "s__Salegentibacter agarivorans", "ani": 77.2025, "matched_fragments": 222, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016236915.1", "gtdb_species": "s__Salegentibacter maritimus", "ani": 76.9929, "matched_fragments": 160, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002715485.1", "gtdb_species": "s__Aequorivita sp002715485", "ani": 76.7932, "matched_fragments": 59, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003054225.1", "gtdb_species": "s__Gramella gaetbulicola", "ani": 76.7768, "matched_fragments": 152, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002364215.1", "gtdb_species": "s__Aequorivita sp002364215", "ani": 76.4304, "matched_fragments": 67, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.89", "num_clustered_genomes": 12, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.079, "doubling_h": null, "growth_tmp": 29.333, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 3513977.125, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Salinimicrobium", "marinum" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }