{ "type": "genome", "identifier": "GCF_014651555.1", "organism": "Pontibacter akesuensis", "title": "Pontibacter akesuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245571", "wgs_master": "BMXC00000000.1", "refseq_category": "na", "taxid": "388950", "species_taxid": "388950", "organism_name": "Pontibacter akesuensis", "infraspecific_name": "strain=KCTC 12758", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465155v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/555/GCF_014651555.1_ASM1465155v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4830693", "genome_size_ungapped": "4830599", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651555.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "4145", "protein_coding_gene_count": "4078", "non_coding_gene_count": "50", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter akesuensis" ], "sample_taxid": [ "388950" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.376 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4830693", "Number of Sequences": "42", "Longest Sequences (bp)": "1692329", "N50 (bp)": "861560", "Gap Ratio (%)": "0.001946", "GCcontent (%)": "51.0", "Number of CDSs": "4070", "Average Protein Length": "334.6", "Coding Ratio (%)": "84.6", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontibacter akesuensis", "strain": "strain=KCTC 12758", "accession": "GCA_014651555.1", "taxid": 388950, "species_taxid": 388950, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1600, "total_fragments": 1600, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter akesuensis", "strain": "strain=AKS 1T", "accession": "GCA_001611675.1", "taxid": 388950, "species_taxid": 388950, "relation_to_type": "type", "validated": true, "ani": 99.9987, "matched_fragments": 1598, "total_fragments": 1600, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter akesuensis", "strain": "strain=DSM 18820", "accession": "GCA_900116885.1", "taxid": 388950, "species_taxid": 388950, "relation_to_type": "type", "validated": true, "ani": 99.994, "matched_fragments": 1596, "total_fragments": 1600, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter actiniarum", "strain": "strain=DSM 19842", "accession": "GCA_000472485.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 80.0804, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter chinhatensis", "strain": "strain=LP51", "accession": "GCA_900113285.1", "taxid": 1436961, "species_taxid": 1436961, "relation_to_type": "type", "validated": true, "ani": 79.1322, "matched_fragments": 702, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter oryzae", "strain": "strain=KIRAN", "accession": "GCA_003576375.1", "taxid": 2304593, "species_taxid": 2304593, "relation_to_type": "type", "validated": true, "ani": 79.0454, "matched_fragments": 599, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter russatus", "strain": "strain=BT326", "accession": "GCA_009931655.1", "taxid": 2694929, "species_taxid": 2694929, "relation_to_type": "type", "validated": true, "ani": 78.6409, "matched_fragments": 619, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter pamirensis", "strain": "strain=TRT317", "accession": "GCA_010015475.1", "taxid": 2562824, "species_taxid": 2562824, "relation_to_type": "type", "validated": true, "ani": 78.4509, "matched_fragments": 555, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_900188175.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 78.3472, "matched_fragments": 522, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ruber", "strain": "strain=JC213", "accession": "GCA_023630205.1", "taxid": 1343895, "species_taxid": 1343895, "relation_to_type": "type", "validated": true, "ani": 78.2665, "matched_fragments": 519, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter deserti", "strain": "strain=JC215", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001907195.1", "gtdb_species": "s__Pontibacter sp001907195", "ani": 79.5717, "matched_fragments": 770, "total_fragments": 1600, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003054055.1", "gtdb_species": "s__Pontibacter mucosus", "ani": 79.2901, "matched_fragments": 717, "total_fragments": 1600, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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