{ "type": "genome", "identifier": "GCF_014651655.1", "organism": "Aidingimonas halophila", "title": "Aidingimonas halophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651655.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245576", "wgs_master": "BMXH00000000.1", "refseq_category": "na", "taxid": "574349", "species_taxid": "574349", "organism_name": "Aidingimonas halophila", "infraspecific_name": "strain=KCTC 12885", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465165v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/655/GCF_014651655.1_ASM1465165v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3879610", "genome_size_ungapped": "3878573", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651655.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3687", "protein_coding_gene_count": "3578", "non_coding_gene_count": "57", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Aidingimonas halophila" ], "sample_taxid": [ "574349" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.100 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3879610", "Number of Sequences": "32", "Longest Sequences (bp)": "1086907", "N50 (bp)": "385757", "Gap Ratio (%)": "0.026729", "GCcontent (%)": "58.2", "Number of CDSs": "3626", "Average Protein Length": "321.9", "Coding Ratio (%)": "90.3", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aidingimonas halophila", "strain": "strain=KCTC 12885", "accession": "GCA_014651655.1", "taxid": 574349, "species_taxid": 574349, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1274, "total_fragments": 1277, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aidingimonas halophila", "strain": "strain=DSM 19219", "accession": "GCA_900106955.1", "taxid": 574349, "species_taxid": 574349, "relation_to_type": "type", "validated": true, "ani": 99.9979, "matched_fragments": 1274, "total_fragments": 1277, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aidingimonas lacisalsi", "strain": "strain=XHU 5135", "accession": "GCA_008079445.1", "taxid": 2604086, "species_taxid": 2604086, "relation_to_type": "type", "validated": true, "ani": 83.1434, "matched_fragments": 825, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 78.2205, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 77.8909, "matched_fragments": 268, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 77.8614, "matched_fragments": 305, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas anticariensis", "strain": "strain=DSM 16096", "accession": "GCA_000428505.1", "taxid": 258591, "species_taxid": 258591, "relation_to_type": "type", "validated": true, "ani": 77.7956, "matched_fragments": 352, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas anticariensis", "strain": "strain=FP35", "accession": "GCA_000409775.1", "taxid": 258591, "species_taxid": 258591, "relation_to_type": "type", "validated": true, "ani": 77.7904, "matched_fragments": 364, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 77.7642, "matched_fragments": 303, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas fontilapidosi", "strain": "strain=CECT 7341", "accession": "GCA_014192285.1", "taxid": 616675, "species_taxid": 616675, "relation_to_type": "type", "validated": true, "ani": 77.7614, "matched_fragments": 281, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pellis", "strain": "strain=L5", "accession": "GCA_008297955.1", "taxid": 2606936, "species_taxid": 2606936, "relation_to_type": "type", "validated": true, "ani": 77.7556, "matched_fragments": 279, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas xianhensis", "strain": "strain=CGMCC 1.6848", "accession": "GCA_900113605.1", "taxid": 442341, "species_taxid": 442341, "relation_to_type": "type", "validated": true, "ani": 77.7428, "matched_fragments": 272, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 77.7197, "matched_fragments": 275, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas icarae", "strain": "strain=D1-1", "accession": "GCA_009901955.1", "taxid": 2691040, 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100755.1", "gtdb_species": "s__Halomonas_E taeanensis", "ani": 78.0546, "matched_fragments": 286, "total_fragments": 1277, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010977575.1", "gtdb_species": "s__Halomonas_B socia", "ani": 77.9983, "matched_fragments": 382, "total_fragments": 1277, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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