{ "type": "genome", "identifier": "GCF_014651775.1", "organism": "Vreelandella hamiltonii", "title": "Vreelandella hamiltonii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651775.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245582", "wgs_master": "BMXN00000000.1", "refseq_category": "reference genome", "taxid": "502829", "species_taxid": "502829", "organism_name": "Vreelandella hamiltonii", "infraspecific_name": "strain=KCTC 22154", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465177v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/775/GCF_014651775.1_ASM1465177v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3932903", "genome_size_ungapped": "3932796", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651775.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "3683", "protein_coding_gene_count": "3577", "non_coding_gene_count": "68", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Vreelandella hamiltonii" ], "sample_taxid": [ "502829" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.110 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3932903", "Number of Sequences": "70", "Longest Sequences (bp)": "403774", "N50 (bp)": "133892", "Gap Ratio (%)": "0.002873", "GCcontent (%)": "60.1", "Number of CDSs": "3613", "Average Protein Length": "325.7", "Coding Ratio (%)": "89.8", "Number of rRNAs": "0", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas hamiltonii", "strain": "strain=KCTC 22154", "accession": "GCA_014651775.1", "taxid": 502829, "species_taxid": 502829, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1276, "total_fragments": 1277, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halomonas johnsoniae", "strain": "strain=KCTC 22157", "accession": "GCA_014651795.1", "taxid": 502832, "species_taxid": 502832, "relation_to_type": "type", "validated": true, "ani": 97.5135, "matched_fragments": 1103, "total_fragments": 1277, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halomonas stevensii", "strain": "strain=S18214", "accession": "GCA_000275725.1", "taxid": 502821, "species_taxid": 502821, "relation_to_type": "type", "validated": true, "ani": 95.6707, "matched_fragments": 1062, "total_fragments": 1277, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halomonas meridiana", "strain": "strain=NBRC 15608", "accession": "GCA_006540125.1", "taxid": 29570, "species_taxid": 29570, "relation_to_type": "type", "validated": true, "ani": 84.05, 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"status": "below_threshold" }, { "organism_name": "Halomonas piezotolerans", "strain": "strain=NBT06E8", "accession": "GCA_009660035.1", "taxid": 2609667, "species_taxid": 2609667, "relation_to_type": "type", "validated": true, "ani": 82.94, "matched_fragments": 825, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lutescens", "strain": "strain=CGMCC 1.15122", "accession": "GCA_014640815.1", "taxid": 1602943, "species_taxid": 1602943, "relation_to_type": "type", "validated": true, "ani": 82.139, "matched_fragments": 793, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas songnenensis", "strain": "strain=CGMCC 1.12152", "accession": "GCA_003002925.1", "taxid": 1176243, "species_taxid": 1176243, "relation_to_type": "type", "validated": true, "ani": 80.6292, "matched_fragments": 655, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas humidisoli", "strain": "strain=WN018", "accession": "GCA_002286955.1", "taxid": 2032624, "species_taxid": 2032624, "relation_to_type": "type", "validated": true, "ani": 79.6232, "matched_fragments": 521, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkaliphila", "strain": "strain=DSM 16354", "accession": "GCA_016107625.1", "taxid": 272774, "species_taxid": 272774, "relation_to_type": "type", "validated": true, "ani": 79.3568, "matched_fragments": 496, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 78.965, "matched_fragments": 476, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": 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