{ "type": "genome", "identifier": "GCF_014651815.1", "organism": "Alteromonas halophila", "title": "Alteromonas halophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651815.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245584", "wgs_master": "BMXP00000000.1", "refseq_category": "reference genome", "taxid": "516698", "species_taxid": "516698", "organism_name": "Alteromonas halophila", "infraspecific_name": "strain=KCTC 22164", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465181v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/815/GCF_014651815.1_ASM1465181v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3952608", "genome_size_ungapped": "3951156", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651815.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3569", "protein_coding_gene_count": "3462", "non_coding_gene_count": "75", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas halophila" ], "sample_taxid": [ "516698" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.129 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3952608", "Number of Sequences": "36", "Longest Sequences (bp)": "883820", "N50 (bp)": "547662", "Gap Ratio (%)": "0.036735", "GCcontent (%)": "50.8", "Number of CDSs": "3516", "Average Protein Length": "333.2", "Coding Ratio (%)": "88.9", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas halophila", "strain": "strain=KCTC 22164", "accession": "GCA_014651815.1", "taxid": 516698, "species_taxid": 516698, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas alba", "strain": "strain=190", "accession": "GCA_002993365.1", "taxid": 2079529, "species_taxid": 2079529, "relation_to_type": "type", "validated": true, "ani": 78.1163, "matched_fragments": 174, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas oceani", "strain": "strain=S35", "accession": "GCA_003731635.1", "taxid": 2071609, "species_taxid": 2071609, "relation_to_type": "type", "validated": true, "ani": 78.0404, "matched_fragments": 178, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas genovensis", "strain": "strain=LMG 24078", "accession": "GCA_010500895.1", "taxid": 471225, "species_taxid": 471225, "relation_to_type": "type", "validated": true, "ani": 77.9673, "matched_fragments": 159, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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