{ "type": "genome", "identifier": "GCF_014651875.1", "organism": "Litchfieldella qijiaojingensis", "title": "Litchfieldella qijiaojingensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651875.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245587", "wgs_master": "BMXS00000000.1", "refseq_category": "reference genome", "taxid": "980347", "species_taxid": "980347", "organism_name": "Litchfieldella qijiaojingensis", "infraspecific_name": "strain=KCTC 22228", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465187v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/875/GCF_014651875.1_ASM1465187v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4768215", "genome_size_ungapped": "4768215", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651875.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "4500", "protein_coding_gene_count": "4362", "non_coding_gene_count": "70", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Litchfieldella qijiaojingensis" ], "sample_taxid": [ "980347" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.345 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4768215", "Number of Sequences": "89", "Longest Sequences (bp)": "504767", "N50 (bp)": "158898", "Gap Ratio (%)": "0.000336", "GCcontent (%)": "60.8", "Number of CDSs": "4383", "Average Protein Length": "319.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "0", "Number of tRNAs": "61", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas qijiaojingensis", "strain": "strain=KCTC 22228", "accession": "GCA_014651875.1", "taxid": 980347, "species_taxid": 980347, 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"matched_fragments": 807, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 80.8126, "matched_fragments": 787, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 80.6922, "matched_fragments": 692, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas salipaludis", "strain": "strain=WRN001", "accession": "GCA_002286975.1", "taxid": 2032625, "species_taxid": 2032625, "relation_to_type": "type", "validated": true, "ani": 80.45, "matched_fragments": 715, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 80.3487, "matched_fragments": 648, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 80.2015, "matched_fragments": 652, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pantelleriensis", "strain": "strain=AAP", "accession": "GCA_900102875.1", "taxid": 48727, "species_taxid": 48727, "relation_to_type": "type", "validated": true, "ani": 80.1907, "matched_fragments": 645, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 80.083, "matched_fragments": 664, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 80.0735, "matched_fragments": 617, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 79.9679, "matched_fragments": 626, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", 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