{ "type": "genome", "identifier": "GCF_014651935.1", "organism": "Marinobacter zhanjiangensis", "title": "Marinobacter zhanjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651935.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245590", "wgs_master": "BMXV00000000.1", "refseq_category": "reference genome", "taxid": "578215", "species_taxid": "578215", "organism_name": "Marinobacter zhanjiangensis", "infraspecific_name": "strain=KCTC 22280", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465193v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/935/GCF_014651935.1_ASM1465193v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4097865", "genome_size_ungapped": "4097825", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651935.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3749", "protein_coding_gene_count": "3664", "non_coding_gene_count": "61", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter zhanjiangensis" ], "sample_taxid": [ "578215" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.155 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4097865", "Number of Sequences": "20", "Longest Sequences (bp)": "764357", "N50 (bp)": "437280", "Gap Ratio (%)": "0.000976", "GCcontent (%)": "60.1", "Number of CDSs": "3728", "Average Protein Length": "328.3", "Coding Ratio (%)": "89.6", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter zhanjiangensis", "strain": "strain=KCTC 22280", "accession": "GCA_014651935.1", "taxid": 578215, "species_taxid": 578215, 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"organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.629, "matched_fragments": 371, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 78.6255, "matched_fragments": 402, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter algicola", "strain": "strain=DG893", "accession": "GCA_000170835.1", "taxid": 236100, "species_taxid": 236100, "relation_to_type": "type", "validated": true, "ani": 78.5886, "matched_fragments": 360, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": 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277961, "species_taxid": 277961, "relation_to_type": "type", "validated": true, "ani": 77.6656, "matched_fragments": 260, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 76.4759, "matched_fragments": 117, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 76.3789, "matched_fragments": 150, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014651935.1", "gtdb_species": 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