{ "type": "genome", "identifier": "GCF_014651955.1", "organism": "Shewanella fodinae", "title": "Shewanella fodinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651955.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245592", "wgs_master": "BMXW00000000.1", "refseq_category": "na", "taxid": "552357", "species_taxid": "552357", "organism_name": "Shewanella fodinae", "infraspecific_name": "strain=KCTC 22506", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465195v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/955/GCF_014651955.1_ASM1465195v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3905718", "genome_size_ungapped": "3905718", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651955.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3631", "protein_coding_gene_count": "3488", "non_coding_gene_count": "106", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella fodinae" ], "sample_taxid": [ "552357" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.118 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3905718", "Number of Sequences": "50", "Longest Sequences (bp)": "443318", "N50 (bp)": "179772", "Gap Ratio (%)": "0.000358", "GCcontent (%)": "48.6", "Number of CDSs": "3518", "Average Protein Length": "325.0", "Coding Ratio (%)": "87.8", "Number of rRNAs": "6", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella fodinae", "strain": "strain=KCTC 22506", "accession": "GCA_014651955.1", "taxid": 552357, "species_taxid": 552357, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sedimentimangrovi", "strain": "strain=FJAT-52962", "accession": "GCA_017354965.1", "taxid": 2814293, "species_taxid": 2814293, "relation_to_type": "type", "validated": true, "ani": 77.9721, "matched_fragments": 169, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella oneidensis", "strain": "strain=MR-1", "accession": "GCA_013267215.1", "taxid": 70863, "species_taxid": 70863, "relation_to_type": "type", "validated": true, "ani": 77.9429, "matched_fragments": 161, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella violacea", "strain": "strain=DSS12", "accession": "GCA_000091325.1", "taxid": 60217, "species_taxid": 60217, "relation_to_type": "type", "validated": true, "ani": 77.2988, "matched_fragments": 80, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella canadensis", "strain": "strain=HAW-EB2", "accession": "GCA_003966225.1", "taxid": 271096, "species_taxid": 271096, "relation_to_type": "type", "validated": true, "ani": 77.0312, "matched_fragments": 101, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014651955.1", "gtdb_species": "s__Shewanella fodinae", "ani": 100.0, "matched_fragments": 1275, "total_fragments": 1278, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.57", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_018394335.1", "gtdb_species": "s__Shewanella dokdonensis", "ani": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Shewanella", "fodinae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }