{ "type": "genome", "identifier": "GCF_014651995.1", "organism": "Cognatilysobacter xinjiangensis", "title": "Cognatilysobacter xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014651995.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245594", "wgs_master": "BMXY00000000.1", "refseq_category": "reference genome", "taxid": "546892", "species_taxid": "546892", "organism_name": "Cognatilysobacter xinjiangensis", "infraspecific_name": "strain=KCTC 22558", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1465199v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014651995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/651/995/GCF_014651995.1_ASM1465199v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3043682", "genome_size_ungapped": "3043548", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014651995.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "2948", "protein_coding_gene_count": "2856", "non_coding_gene_count": "58", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Cognatilysobacter xinjiangensis" ], "sample_taxid": [ "546892" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.814 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3043682", "Number of Sequences": "10", "Longest Sequences (bp)": "1741615", "N50 (bp)": "1741615", "Gap Ratio (%)": "0.004403", "GCcontent (%)": "69.6", "Number of CDSs": "2901", "Average Protein Length": "318.5", "Coding Ratio (%)": "91.1", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter xinjiangensis", "strain": "strain=KCTC 22558", "accession": "GCA_014651995.1", "taxid": 546892, "species_taxid": 546892, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1009, "total_fragments": 1010, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter segetis", "strain": "strain=17J68-2", "accession": "GCA_004359965.1", "taxid": 2492394, "species_taxid": 2492394, "relation_to_type": "type", "validated": true, "ani": 85.9652, "matched_fragments": 749, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrigena", "strain": "strain=17J7-1", "accession": "GCA_004361065.1", "taxid": 2488749, "species_taxid": 2488749, "relation_to_type": "type", "validated": true, "ani": 85.0046, "matched_fragments": 770, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter lacus", "strain": "strain=UKS-15", "accession": "GCA_008274655.1", "taxid": 1643323, "species_taxid": 1643323, "relation_to_type": "type", "validated": true, "ani": 83.6772, "matched_fragments": 610, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 82.1877, "matched_fragments": 638, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 81.4622, "matched_fragments": 542, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 81.4412, "matched_fragments": 596, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 81.425, "matched_fragments": 626, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 81.12, "matched_fragments": 531, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 81.0842, "matched_fragments": 573, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 81.0806, "matched_fragments": 587, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter ruishenii", "strain": "strain=CGMCC 1.10136", "accession": "GCA_007830115.1", "taxid": 686800, "species_taxid": 686800, "relation_to_type": "type", "validated": true, "ani": 80.9206, "matched_fragments": 553, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter solisilvae", "strain": "strain=R19", "accession": "GCA_016613535.2", "taxid": 2763317, "species_taxid": 2763317, "relation_to_type": "type", "validated": true, "ani": 80.9097, "matched_fragments": 600, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter enzymogenes", "strain": "strain=ATCC 29487", "accession": "GCA_900106525.1", "taxid": 69, "species_taxid": 69, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8585, "matched_fragments": 658, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 80.8163, "matched_fragments": 582, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 79.7864, "matched_fragments": 466, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas oryziterrae", "strain": "strain=DSM 21050", "accession": "GCA_000420545.1", "taxid": 498055, "species_taxid": 498055, "relation_to_type": "type", "validated": true, "ani": 78.9955, "matched_fragments": 369, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas oryziterrae", "strain": "strain=YC6267", "accession": "GCA_000747135.1", "taxid": 498055, "species_taxid": 498055, "relation_to_type": "type", "validated": true, "ani": 78.8435, "matched_fragments": 370, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014651995.1", "gtdb_species": "s__Lysobacter xinjiangensis", "ani": 100.0, "matched_fragments": 1009, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004359965.1", "gtdb_species": "s__Lysobacter segetis", "ani": 85.9716, "matched_fragments": 748, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004361065.1", "gtdb_species": "s__Lysobacter terrigena", "ani": 84.9927, "matched_fragments": 771, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003367355.1", "gtdb_species": "s__Lysobacter sp003367355", "ani": 84.7546, "matched_fragments": 776, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000426005.1", "gtdb_species": "s__Lysobacter sp000426005", "ani": 84.6404, "matched_fragments": 768, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008274655.1", "gtdb_species": "s__Lysobacter lacus", "ani": 83.6915, "matched_fragments": 609, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830115.1", "gtdb_species": "s__Lysobacter ruishenii", "ani": 80.902, "matched_fragments": 555, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Cognatilysobacter", "xinjiangensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }